CX292859

Overview
NameCX292859
Unique NameCX292859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_PSESM (GTP cyclohydrolase-2 OS=Pseudomonas syringae pv. tomato GN=ribA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.428e-44
Identity = 93/161 (57.76%), Postives = 109/161 (67.70%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLE 504
            GD+ DG  +L RVHSECLTGD   S RCDCG QL  AM+ I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML+ LGV++++LMTNNP K   L   G+ VA RVPL T     N+ YL TK  K+GH+ G E
Sbjct:   38 GDVADGAPVLGRVHSECLTGDALFSQRCDCGSQLEAAMRAIATEGRGVLLYLR-QEGRGIGLMNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLQHLGVQSLRLMTNNPRKVKALTDMGINVAERVPLHTGQNPHNRLYLATKAGKLGHMMGNE 197          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMA (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup A GN=ribA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.428e-44
Identity = 87/157 (55.41%), Postives = 112/157 (71.34%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            GD  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++A GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      ENKRYL+TK  K+GH+
Sbjct:   39 GDCSDGNPVLTRIHSECLTGDALFSKKCDCGPQLEAAMKAVQAEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANVALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENKRYLQTKADKLGHL 194          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_AZOVD (GTP cyclohydrolase-2 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ribA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.428e-44
Identity = 92/166 (55.42%), Postives = 111/166 (66.87%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 519
            G + DG  +L R+HSECLTGD   S RCDCG QL  A++ I A GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+YGI   ML  LG+  +KLMTNNP K   L+G G+ V  RVPL T +   N++YL TK  K+GH+ G    G +
Sbjct:   38 GTVDDGAPVLGRLHSECLTGDALFSLRCDCGFQLEAALRAIAAEGRGVLLYLR-QEGRGIGLLNKIRAYKLQDAGADTVEANERLGFRADQRDYGICKPMLEHLGITAIKLMTNNPRKVKALEGAGIQVTERVPLQTGLNPHNQKYLATKAGKLGHLLGSLHQGEV 202          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_PSEPW (GTP cyclohydrolase-2 OS=Pseudomonas putida (strain W619) GN=ribA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 93/166 (56.02%), Postives = 110/166 (66.27%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 519
            GDI DG+ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y I   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G E  G +
Sbjct:   38 GDIADGEPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAICLPMLEHLGVKSLRLMTNNPRKVKALTDMNIKVAERVPLHTGHNPHNRYYLATKADKLGHMLGNEHQGEV 202          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_ARCFU (GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=ribA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.409e-44
Identity = 87/158 (55.06%), Postives = 116/158 (73.42%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +G + +G D+LVR+HSECLTGD+F S RCDCGDQL  A++ I+  G+GV +Y+RGHEGRGIGL +KL AY LQ++G+DTV+AN ELG P D R YGI AQ+L DL V++++L+TNNP K   LK YG  +  R P+     + N  YL+ K+ KMGH+
Sbjct:  218 KGRVDEG-DVLVRIHSECLTGDVFHSLRCDCGDQLENALKMIDREGKGVAIYMRGHEGRGIGLINKLMAYKLQEEGKDTVDANIELGFPPDMRSYGIAAQILMDLKVKSIRLLTNNPLKIEELKKYGFKIV-REPIEVEPCEVNLPYLKAKKDKMGHL 373          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_THEPX (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter sp. (strain X514) GN=ribBA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 90/158 (56.96%), Postives = 116/158 (73.42%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +GD+   + +LVR+HSECLTGDI GS RCDCGDQL  AM++I   G G+LVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K   L  YGL V  RV +       N++YL+TK+ KMGH+
Sbjct:  238 KGDVNK-EPVLVRIHSECLTGDILGSLRCDCGDQLHAAMERIGQEG-GILVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYNIAAQILKDIGVKKIRIMTNNPQKITELSDYGLDVVERVSIEICPNHYNEKYLKTKKEKMGHL 392          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_THEP3 (Riboflavin biosynthesis protein ribBA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ribBA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 91/158 (57.59%), Postives = 117/158 (74.05%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +GDI   + +LVR+HSECLTGDI GS RCDCGDQL  AM++I   G GVLVYLR  EGRGIGL +K++AY+LQD G DTVEAN +LG P D REY I AQ+L+D+GV+ +++MTNNP K + L  YGL V  RV +       N++YL+TK+ +MGH+
Sbjct:  238 KGDINK-EPVLVRIHSECLTGDILGSLRCDCGDQLHAAMERIGQEG-GVLVYLR-QEGRGIGLLNKIKAYHLQDQGLDTVEANIKLGFPPDLREYSIAAQILKDIGVKKIRIMTNNPQKIMELSDYGLDVVERVSIEICPNHYNEKYLKTKKERMGHL 392          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBBA_PARD8 (Riboflavin biosynthesis protein ribBA OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ribBA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 86/158 (54.43%), Postives = 113/158 (71.52%), Query Frame = 1
Query:   19 QGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            +G     + ILVRVHS C TGDIFGS RC+CG+QL  AM++I+  G+GV+VYL   EGRGIGL  K++AY LQ+DG DTV+AN  LG   D R+YG+GAQ+LR +GV  M+LM+NNP K VGL+ YGL V   VP+       N+ Y++TK+ +MGH+
Sbjct:  244 KGKFEKDEPILVRVHSSCATGDIFGSMRCECGEQLHEAMRRIDQEGKGVIVYLN-QEGRGIGLMEKMKAYKLQEDGLDTVDANLHLGHQADERDYGVGAQILRHIGVTKMRLMSNNPVKRVGLEAYGLEVVENVPIEVKPNPYNEFYMKTKKERMGHV 400          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_PSEE4 (GTP cyclohydrolase-2 OS=Pseudomonas entomophila (strain L48) GN=ribA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 91/166 (54.82%), Postives = 110/166 (66.27%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRL 519
            GDI DG+ +L R+HSECLTGD   S RCDCG QL  A+Q I   GRGVL+YLR  EGRGIGL +K+RAY LQD G DTVEANE LG   D R+Y +   ML  LGV++++LMTNNP K   L    + VA RVPL T     N+ YL TK  K+GH+ G +  G +
Sbjct:   38 GDIADGEPVLGRLHSECLTGDALFSQRCDCGSQLEAALQAIAREGRGVLLYLR-QEGRGIGLLNKIRAYELQDGGADTVEANERLGFAADQRDYAMCLPMLEHLGVKSLRLMTNNPRKVKALTDMSIKVAERVPLHTGHNPHNRLYLATKADKLGHMMGNKHQGEV 202          
BLAST of CX292859 vs. ExPASy Swiss-Prot
Match: RIBA_NEIMF (GTP cyclohydrolase-2 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=ribA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.684e-43
Identity = 85/157 (54.14%), Postives = 111/157 (70.70%), Query Frame = 1
Query:   22 GDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 492
            G+  DG  +L R+HSECLTGD   S +CDCG QL  AM+ ++  GRG++VYLR  EGRGIGL +K+RAY+LQD G DTVEAN  LGLPVD+R++ +   +   LG+R++KL+TNNP K   LK  G+ V  R+PL      ENKRYL+TK  K+GH+
Sbjct:   39 GNFSDGNPVLTRIHSECLTGDALFSRKCDCGPQLEAAMRAVQTEGRGIIVYLR-QEGRGIGLINKIRAYHLQDQGMDTVEANLALGLPVDARDFRLAQSIYEYLGIRSVKLLTNNPEKIQTLKDAGINVVERIPLHVGENLENKRYLQTKADKLGHL 194          
The following BLAST results are available for this feature:
BLAST of CX292859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBA_PSESM2.428e-4457.76GTP cyclohydrolase-2 OS=Pseudomonas syringae pv. t... [more]
RIBA_NEIMA2.428e-4455.41GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]
RIBA_AZOVD2.428e-4455.42GTP cyclohydrolase-2 OS=Azotobacter vinelandii (st... [more]
RIBA_PSEPW3.171e-4456.02GTP cyclohydrolase-2 OS=Pseudomonas putida (strain... [more]
RIBA_ARCFU5.409e-4455.06GTP cyclohydrolase-2 OS=Archaeoglobus fulgidus GN=... [more]
RIBBA_THEPX2.055e-4356.96Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBBA_THEP32.055e-4357.59Riboflavin biosynthesis protein ribBA OS=Thermoana... [more]
RIBBA_PARD82.055e-4354.43Riboflavin biosynthesis protein ribBA OS=Parabacte... [more]
RIBA_PSEE42.055e-4354.82GTP cyclohydrolase-2 OS=Pseudomonas entomophila (s... [more]
RIBA_NEIMF2.684e-4354.14GTP cyclohydrolase-2 OS=Neisseria meningitidis ser... [more]

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Properties
Property NameValue
Genbank descriptionC04022D02SK FlavFr1 Citrus clementina cDNA clone C04022D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292859 ID=CX292859; Name=CX292859; organism=Citrus clementina; type=EST; length=676bp
GAATTCGGCACGAGGGAACAGGGTGACATTGGGGATGGACAAGATATTCT
TGTGAGAGTGCACTCAGAGTGTCTCACTGGAGATATATTTGGATCAGCCA
GATGTGATTGTGGTGATCAGCTTGCACTTGCAATGCAGCAGATTGAGGCT
GCTGGCAGGGGTGTATTAGTTTATCTCCGTGGTCATGAGGGAAGGGGCAT
TGGTTTAGGCCACAAGCTTCGCGCTTATAACTTGCAGGACGATGGGCGTG
ATACAGTTGAAGCAAATGAGGAATTGGGATTGCCTGTTGACTCACGGGAA
TATGGCATTGGTGCACAGATGCTAAGGGATCTTGGTGTTCGAACAATGAA
GCTGATGACAAACAACCCTTCGAAGTATGTTGGACTCAAGGGTTATGGTT
TGGCTGTTGCAGGAAGGGTTCCCCTAATAACTCCCATTAAAAAGGAAAAC
AAGAGATATCTGGAGACTAAACGTGCTAAAATGGGTCACATTTATGGGTT
AGAATCTAATGGCCGGTTAACAAATCTCATTAACGGTAACGGTAAGCCGA
GTATCAAATCTTCATCTGATACTGTATCTGACTCGTAAGCTGCACTAATT
TACTTGGTTTGGACACGTGATTCAAGTACGAGTTGAAGATAGACTCTGGC
ATGACAAAAAGGGAAGCATTATCACC
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