CX293240

Overview
NameCX293240
Unique NameCX293240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX293240 vs. ExPASy Swiss-Prot
Match: C520A_DICDI (Probable cytochrome P450 520A1 OS=Dictyostelium discoideum GN=cyp520a1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 55/212 (25.94%), Postives = 100/212 (47.17%), Query Frame = 1 
Query:   52 SLNLLSNTIFSIDLVNPNEREFKD--------TVSGILEEVGKPNLSDHFPLLKKFDLQGIKRRITVYSAKMLEVFDRLVDQRLKHRQEHGCSISTECKDILDTLLNII---QDKSVEIETKHLK-HFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGK-CKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKD 648
            S+N++   + SI+L + N  + KD        ++  I + +G     D FP L  F     K RI+ ++  +  + D +  + +  +Q     I+ E ++I+D L++      D+  E+  + L      D+ +A  DT++ST+EW M  +++NP             VGK C  +   D+ +L  ++A   E LR+ P   L LPR + +D
Sbjct:  180 SMNIILGLMLSIELPHSNSND-KDGQFSKVLHSIDEIFKSIGTNGPEDIFPTLLPF----FKNRISTFTNHLNVIKDFI--RSIYKQQIKTFDINIEPRNIMDCLISEYYEDDDQEDEVAKQELIIQLCIDMLVAATDTSASTLEWFMLFMINNPNLQEDLYEEVVNVVGKDCPYVTFDDVPKLALIKACYFEILRIRPVTSLSLPRVSMED 384
The following BLAST results are available for this feature:
BLAST of CX293240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
C520A_DICDI4.309e-1125.94Probable cytochrome P450 520A1 OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC04029C02SK FlavFr1 Citrus clementina cDNA clone C04029C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293240 ID=CX293240; Name=CX293240; organism=Citrus clementina; type=EST; length=648bp
AATTCGGCACGTAGGAAAGCAATAGATGTTGGCCAAGCTGCTTTCAATAC
TTCACTTAATTTATTATCCAACACAATTTTTTCTATTGATTTGGTTAATC
CCAATGAGCGAGAGTTTAAGGATACAGTTTCTGGTATCTTGGAAGAAGTA
GGAAAGCCTAACTTGTCCGACCATTTTCCTCTTCTCAAAAAGTTTGATCT
GCAGGGGATAAAGCGCCGCATCACAGTTTATAGTGCCAAGATGCTCGAGG
TGTTTGATCGCTTGGTTGATCAACGATTGAAGCATAGACAAGAACATGGT
TGCAGTATTAGCACCGAATGTAAAGATATATTAGATACTCTTCTCAATAT
TATCCAAGACAAGAGTGTTGAGATTGAAACAAAACATCTCAAGCACTTTT
TTGCGGATTTGTTTATTGCGGGGAATGACACAACTTCAAGTACAATGGAA
TGGGCAATGGCAGAACTACTCCACAACCCTGAGGCTTTATTGAAAGCAAA
ATTGGAGCTAGAACAAACAGTTGGCAAGTGTAAACCAATTGAGGAATCTG
ACATCACTCGGCTACCTTATCTACAAGCTGTTGTTAAAGAAACTTTGAGA
TTGCACCCTGCAGTTCCCTTATTACTTCCCCGCAAAGCCACAAAAGAT
back to top