CX293319

Overview
NameCX293319
Unique NameCX293319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.223e-21
Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ--RLLNETEY 393
            L+ G+Q+HC  ++N    D KL + L+DMY KCG+I  A  +F  +  K V +WTSMID Y  NG+  +ALE+F  M E    V PN VTFL  +SAC H+GL+ +G+E F  M +  RL+  TE+
Sbjct:  297 LWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMMKEKYRLVPGTEH 422          

HSP 2 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 35/116 (30.17%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    7 LALCLLILFP--GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348
            L  C L+ +P  G+QVH  +IK          +AL+DMY+K G + D+ RVF+ +++K + +W +++ G+ +NG   +AL +F  M    V+ +  T    +  C    +L +G++
Sbjct:   91 LGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQ 206          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.725e-21
Identity = 49/113 (43.36%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFE-DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372
            G+Q+H   +K+     DV LG++L+DMYAK G+I+DA   F+ M++K V +WTS+I GYG++GN  +A++L+  M+   ++PN VTFL  LSAC H+G    G + +D+M  +
Sbjct:  336 GRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINK 448          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP305_ARATH (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.231e-21
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 LELALCLLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYG 396
            L++   L  L  G+Q+H   IK     +    +ALVDMY KCG+ID+   +FD M ++ V +WT +I G+G+NG   +A   F  M    ++PN VTFLG LSAC HSGLL + R T ++M      ++EYG
Sbjct:  450 LKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLETM------KSEYG 575          

HSP 2 Score: 22.7126 bits (47), Expect = 3.231e-21
Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  371 DYSMKPNMEHYACM 412
            +Y ++P +EHY C+
Sbjct:  573 EYGLEPYLEHYYCV 586          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.231e-21
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            G+ +   + KN    DV +G+AL+DMY KCG  + A +VF  M Q+  FTWT+M+ G   NG   +A+++F  MQ+  +QP+ +T+LG LSAC HSG++ + R+ F  M
Sbjct:  387 GEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495          

HSP 2 Score: 22.7126 bits (47), Expect = 3.231e-21
Identity = 7/22 (31.82%), Postives = 12/22 (54.55%), Query Frame = 2
Query:  347 KHLTAWHRDYSMKPNMEHYACM 412
            K       D+ ++P++ HY CM
Sbjct:  490 KFFAKMRSDHRIEPSLVHYGCM 511          

HSP 3 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 315
            G+++HC ++K     ++ + +ALV MY+ CG +D A  VFD   ++ VF+W  MI GY +     +++EL   M+   V P  VT L  LSAC
Sbjct:  154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSAC 246          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.268e-21
Identity = 43/109 (39.45%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            G+ +H  L K     D  LG  L+DMYAKCG++++A  VF ++++K V  WT++I GY  +G+  +A+  F  MQ+  ++PN +TF   L+AC ++GL+ +G+  F SM
Sbjct:  266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374          

HSP 2 Score: 29.261 bits (64), Expect = 9.268e-21
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  368 RDYSMKPNMEHYACM 412
            RDY++KP +EHY C+
Sbjct:  376 RDYNLKPTIEHYGCI 390          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   82 DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            D+ + ++L+DMY KCG++D A  +F+ M+Q+ V +W+SMI GY  NGN  +ALE F  M+E  V+PN +TF+G LSAC H GL+ +G+  F  M
Sbjct:  254 DIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMM 347          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.207e-20
Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   25 ILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            +L  G++VH   ++N    DV +GSALVDMY+KCG ++ A  VF ++ +K +F W S+I+G   +G   +AL++F  M+   V+PN VTF+   +AC H+GL+ +GR  + SM
Sbjct:  302 VLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSM 414          

HSP 2 Score: 24.6386 bits (52), Expect = 1.207e-20
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 2
Query:  371 DYSMKPNMEHYACMAH 418
            DYS+  N+EHY  M H
Sbjct:  417 DYSIVSNVEHYGGMVH 432          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRL---LNETEYGTL 402
            L I    + +H  ++++   ++V + +ALVDMYAKCG I  A  +FD M ++ V TW +MIDGYG +G    ALELF  MQ+  ++PN VTFL  +SAC HSGL+  G + F  M +     L+   YG +
Sbjct:  451 LSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581          

HSP 2 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGR 345
            L ++  G+++H   +++     V + +ALVDMYAKCG ++ A ++FD M ++ V +W SMID Y +N NP +A+ +F  M +  V+P  V+ +GAL AC   G L +GR
Sbjct:  249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357          

HSP 3 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 33/104 (31.73%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348
            G+++H  L+K+    D+   + L +MYAKC ++++A +VFD M ++ + +W +++ GY +NG    ALE+   M E  ++P+++T +  L A     L++ G+E
Sbjct:  154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE 257          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYG 396
            G QVHC  +K     +  + + L+DMYAKCG +  A R+FD M  + V +W+++I GY ++G   +AL LF  M+   ++PN+VTF+G L+AC H GL+ +G + + +M      +TE+G
Sbjct:  492 GSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATM------QTEHG 605          

HSP 2 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 32/107 (29.91%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348
            L  G+++H  ++ +    D  L + ++ MY KCG + DA  VFD M ++ + ++TS+I GY +NG   +A+ L+  M +  + P+   F   + AC  S  +  G++
Sbjct:   83 LAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.037e-20
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   79 EDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            ++V + +AL+DMY+KCG I +A  +FD+  +K V TWT+MI GY  NG   +AL+LF  M +   +PN++TFL  L AC HSG L KG E F  M Q
Sbjct:  391 DNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQ 487          

HSP 2 Score: 23.8682 bits (50), Expect = 2.037e-20
Identity = 6/13 (46.15%), Postives = 11/13 (84.62%), Query Frame = 2
Query:  374 YSMKPNMEHYACM 412
            Y++ P ++HY+CM
Sbjct:  489 YNISPGLDHYSCM 501          

HSP 3 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 297
            + VH  LIK+  + DV +G+A VDM+ KC  +D A +VF+ M ++   TW +M+ G+ ++G+ ++A  LF  M+   + P+ VT +
Sbjct:   72 EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVM 157          
The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP448_ARATH1.223e-2145.24Pentatricopeptide repeat-containing protein At5g66... [more]
PP244_ARATH2.725e-2143.36Pentatricopeptide repeat-containing protein At3g20... [more]
PP305_ARATH3.231e-2141.67Pentatricopeptide repeat-containing protein At4g08... [more]
PP235_ARATH3.231e-2142.20Putative pentatricopeptide repeat-containing prote... [more]
PP449_ARATH9.268e-2139.45Pentatricopeptide repeat-containing protein At5g66... [more]
PP128_ARATH1.035e-2047.87Pentatricopeptide repeat-containing protein At1g77... [more]
PPR15_ARATH1.207e-2041.59Pentatricopeptide repeat-containing protein At1g06... [more]
PPR32_ARATH1.766e-2041.98Pentatricopeptide repeat-containing protein At1g11... [more]
PP280_ARATH1.766e-2039.17Pentatricopeptide repeat-containing protein At3g53... [more]
PP323_ARATH2.037e-2048.45Pentatricopeptide repeat-containing protein At4g19... [more]

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Properties
Property NameValue
Genbank descriptionC04030C07SK FlavFr1 Citrus clementina cDNA clone C04030C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bp
TTGGAGCTTGCTCTGTGTTTACTGATTTTGTTTCCCGGTCAACAGGTTCA
TTGCCAACTTATTAAGAATGTGCCCTTTGAGGATGTAAAACTGGGAAGTG
CTCTTGTGGACATGTATGCAAAATGTGGAAAGATTGATGATGCTCCAAGA
GTTTTTGACCACATGCAACAAAAGATCGTGTTTACATGGACTTCCATGAT
TGATGGTTATGGAAAGAATGGGAACCCGAATCAAGCACTTGAGCTCTTTT
GTATGATGCAAGAATGTTGCGTCCAACCCAATTATGTTACATTCCTTGGT
GCTCTCTCGGCTTGTGGACACTCTGGTTTACTTGCTAAAGGTCGCGAAAC
ATTTGACAGCATGGCACAGAGATTACTCAATGAAACCGAATATGGAACAT
TATGCTTGTATGGCCCAT
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