CX293319
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP448_ARATH (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.223e-21 Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ--RLLNETEY 393 L+ G+Q+HC ++N D KL + L+DMY KCG+I A +F + K V +WTSMID Y NG+ +ALE+F M E V PN VTFL +SAC H+GL+ +G+E F M + RL+ TE+ Sbjct: 297 LWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMMKEKYRLVPGTEH 422 HSP 2 Score: 67.781 bits (164), Expect = 1.957e-11 Identity = 35/116 (30.17%), Postives = 64/116 (55.17%), Query Frame = 1 Query: 7 LALCLLILFP--GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348 L C L+ +P G+QVH +IK +AL+DMY+K G + D+ RVF+ +++K + +W +++ G+ +NG +AL +F M V+ + T + C +L +G++ Sbjct: 91 LGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQ 206
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.725e-21 Identity = 49/113 (43.36%), Postives = 77/113 (68.14%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFE-DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372 G+Q+H +K+ DV LG++L+DMYAK G+I+DA F+ M++K V +WTS+I GYG++GN +A++L+ M+ ++PN VTFL LSAC H+G G + +D+M + Sbjct: 336 GRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINK 448
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP305_ARATH (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 3.231e-21 Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1 Query: 1 LELALCLLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYG 396 L++ L L G+Q+H IK + +ALVDMY KCG+ID+ +FD M ++ V +WT +I G+G+NG +A F M ++PN VTFLG LSAC HSGLL + R T ++M ++EYG Sbjct: 450 LKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLETM------KSEYG 575 HSP 2 Score: 22.7126 bits (47), Expect = 3.231e-21 Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = 2 Query: 371 DYSMKPNMEHYACM 412 +Y ++P +EHY C+ Sbjct: 573 EYGLEPYLEHYYCV 586
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 3.231e-21 Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 G+ + + KN DV +G+AL+DMY KCG + A +VF M Q+ FTWT+M+ G NG +A+++F MQ+ +QP+ +T+LG LSAC HSG++ + R+ F M Sbjct: 387 GEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495 HSP 2 Score: 22.7126 bits (47), Expect = 3.231e-21 Identity = 7/22 (31.82%), Postives = 12/22 (54.55%), Query Frame = 2 Query: 347 KHLTAWHRDYSMKPNMEHYACM 412 K D+ ++P++ HY CM Sbjct: 490 KFFAKMRSDHRIEPSLVHYGCM 511 HSP 3 Score: 67.3958 bits (163), Expect = 2.556e-11 Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 315 G+++HC ++K ++ + +ALV MY+ CG +D A VFD ++ VF+W MI GY + +++EL M+ V P VT L LSAC Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSAC 246
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 9.268e-21 Identity = 43/109 (39.45%), Postives = 70/109 (64.22%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 G+ +H L K D LG L+DMYAKCG++++A VF ++++K V WT++I GY +G+ +A+ F MQ+ ++PN +TF L+AC ++GL+ +G+ F SM Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374 HSP 2 Score: 29.261 bits (64), Expect = 9.268e-21 Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2 Query: 368 RDYSMKPNMEHYACM 412 RDY++KP +EHY C+ Sbjct: 376 RDYNLKPTIEHYGCI 390
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.035e-20 Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 1 Query: 82 DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 D+ + ++L+DMY KCG++D A +F+ M+Q+ V +W+SMI GY NGN +ALE F M+E V+PN +TF+G LSAC H GL+ +G+ F M Sbjct: 254 DIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMM 347
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.207e-20 Identity = 47/113 (41.59%), Postives = 74/113 (65.49%), Query Frame = 1 Query: 25 ILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 +L G++VH ++N DV +GSALVDMY+KCG ++ A VF ++ +K +F W S+I+G +G +AL++F M+ V+PN VTF+ +AC H+GL+ +GR + SM Sbjct: 302 VLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSM 414 HSP 2 Score: 24.6386 bits (52), Expect = 1.207e-20 Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 2 Query: 371 DYSMKPNMEHYACMAH 418 DYS+ N+EHY M H Sbjct: 417 DYSIVSNVEHYGGMVH 432
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20 Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRL---LNETEYGTL 402 L I + +H ++++ ++V + +ALVDMYAKCG I A +FD M ++ V TW +MIDGYG +G ALELF MQ+ ++PN VTFL +SAC HSGL+ G + F M + L+ YG + Sbjct: 451 LSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581 HSP 2 Score: 84.7297 bits (208), Expect = 1.547e-16 Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGR 345 L ++ G+++H +++ V + +ALVDMYAKCG ++ A ++FD M ++ V +W SMID Y +N NP +A+ +F M + V+P V+ +GAL AC G L +GR Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357 HSP 3 Score: 69.3218 bits (168), Expect = 6.727e-12 Identity = 33/104 (31.73%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348 G+++H L+K+ D+ + L +MYAKC ++++A +VFD M ++ + +W +++ GY +NG ALE+ M E ++P+++T + L A L++ G+E Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKE 257
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20 Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYG 396 G QVHC +K + + + L+DMYAKCG + A R+FD M + V +W+++I GY ++G +AL LF M+ ++PN+VTF+G L+AC H GL+ +G + + +M +TE+G Sbjct: 492 GSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATM------QTEHG 605 HSP 2 Score: 65.4698 bits (158), Expect = 9.714e-11 Identity = 32/107 (29.91%), Postives = 59/107 (55.14%), Query Frame = 1 Query: 28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348 L G+++H ++ + D L + ++ MY KCG + DA VFD M ++ + ++TS+I GY +NG +A+ L+ M + + P+ F + AC S + G++ Sbjct: 83 LAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQ 189
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.037e-20 Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1 Query: 79 EDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 ++V + +AL+DMY+KCG I +A +FD+ +K V TWT+MI GY NG +AL+LF M + +PN++TFL L AC HSG L KG E F M Q Sbjct: 391 DNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQ 487 HSP 2 Score: 23.8682 bits (50), Expect = 2.037e-20 Identity = 6/13 (46.15%), Postives = 11/13 (84.62%), Query Frame = 2 Query: 374 YSMKPNMEHYACM 412 Y++ P ++HY+CM Sbjct: 489 YNISPGLDHYSCM 501 HSP 3 Score: 67.0106 bits (162), Expect = 3.339e-11 Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 297 + VH LIK+ + DV +G+A VDM+ KC +D A +VF+ M ++ TW +M+ G+ ++G+ ++A LF M+ + P+ VT + Sbjct: 72 EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVM 157 The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 188
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bpback to top |