CX293319

Overview
NameCX293319
Unique NameCX293319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.048e-20
Identity = 47/112 (41.96%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            G+ VHCQ +       + + ++L+ MY KCG + DA R+FD    K V +W SMI GY ++G   QA+ELF  MM +   +P+ +T+LG LS+C H+GL+ +GR+ F+ MA+
Sbjct:  240 GRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAE 351          

HSP 2 Score: 22.7126 bits (47), Expect = 2.048e-20
Identity = 5/14 (35.71%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  371 DYSMKPNMEHYACM 412
            ++ +KP + HY+C+
Sbjct:  351 EHGLKPELNHYSCL 364          

HSP 3 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGR 345
            G   HC  +K     DV LGS+LV +Y   G++++A +VF+ M ++ V +WT+MI G+ +    +  L+L+  M++    PN  TF   LSAC  SG L +GR
Sbjct:  139 GSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGR 241          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.013e-20
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPF--EDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            G+ +HC + K       D+ L ++LV MYAKCG I+DA  +F  M QK   +W SMI G   +G  ++AL LF  M +   +PN VTFLG LSAC HSGL+ +G E F +M +
Sbjct:  485 GKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKE 597          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.434e-20
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFED-VKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372
            G+ VH  L+++  FE  + + +AL+ MYAKCG I +A R+FD M +K   TW +MI GYG +G   +AL +F  M    + P  VTFL  L AC H+GL+ +G E F+SM  R
Sbjct:  439 GKWVH-DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550          

HSP 2 Score: 24.6386 bits (52), Expect = 3.434e-20
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2
Query:  365 HRDYSMKPNMEHYACM 412
            HR Y  +P+++HYACM
Sbjct:  549 HR-YGFEPSVKHYACM 563          

HSP 3 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 1
Query:   46 VHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYGTLCLYG 414
            +H   +K+       + +AL  +Y+K  +I+ A ++FD   +K + +W +MI GY +NG    A+ LF  MQ+    PN VT    LSAC   G L+ G+   D +       + Y +  L G
Sbjct:  341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.935e-20
Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHM-QQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYG 396
            GQQ+H ++ +    ++V+L +AL+DMYAKCG I D+ RVF  +  ++ + +WTSM+ GYG +G   +A+ELF  M    ++P+ + F+  LSAC H+GL+ KG + F+ M      E+EYG
Sbjct:  332 GQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVM------ESEYG 446          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.458e-20
Identity = 42/109 (38.53%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            G+++HC L++     ++++G+AL++MY+KCG ++++ RVF+ M ++ V TWT MI  YG  G   +ALE F  M++  + P+ V F+  + AC HSGL+ +G   F+ M
Sbjct:  528 GKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKM 636          

HSP 2 Score: 22.7126 bits (47), Expect = 4.458e-20
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  374 YSMKPNMEHYACM 412
            Y + P +EHYAC+
Sbjct:  640 YKIDPMIEHYACV 652          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.477e-20
Identity = 45/117 (38.46%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   37 GQQVHCQLIKNV------PFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            G Q H  ++K+         +D+ +G++L+DMY KCG +++   VF  M ++   +W +MI G+ +NG  N+ALELF  M E   +P+++T +G LSACGH+G + +GR  F SM +
Sbjct:  405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521          

HSP 2 Score: 23.483 bits (49), Expect = 4.477e-20
Identity = 7/21 (33.33%), Postives = 13/21 (61.90%), Query Frame = 2
Query:  350 HLTAWHRDYSMKPNMEHYACM 412
            + ++  RD+ + P  +HY CM
Sbjct:  515 YFSSMTRDFGVAPLRDHYTCM 535          

HSP 3 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348
            G QVH  + K+    DV +GSALVDMY+KCG ++DA RVFD M  + V +W S+I  + +NG   +AL++F MM E  V+P+ VT    +SAC     +  G+E
Sbjct:  171 GVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.478e-20
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372
            L  L  G+Q+H  + ++    D  L SAL+DMY+KCG   +A R+F+ + +K V +WT MI  YG +G P +AL  F  MQ+  ++P+ VT L  LSACGH+GL+ +G + F  M  +
Sbjct:  423 LAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSK 540          

HSP 2 Score: 23.8682 bits (50), Expect = 4.478e-20
Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  347 KHLTAWHRDYSMKPNMEHYACM 412
            K  +     Y ++P +EHY+CM
Sbjct:  532 KFFSQMRSKYGIEPIIEHYSCM 553          

HSP 3 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETE 390
            L  G+ +H  +I++V   D+ +  +L+D+Y KCG+ + A  VF   Q+ +  +W  MI  Y   GN  +A+E++  M    V+P+ VTF   L AC     L KG++   S+++  L   E
Sbjct:  325 LLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDE 445          

HSP 4 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   31 FPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEY 393
            F G+ +H  ++K+    DV + S+LV MYAK    +++ +VFD M ++ V +W ++I  + ++G   +ALELF  M+    +PN V+   A+SAC     L +G+E      ++     EY
Sbjct:  124 FLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 244          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.497e-20
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            G+ VH  +I+N    D    ++ +DMYA+CG I  A  VFD M ++ V +W+SMI+ +G NG   +AL+ F  M+   V PN VTF+  LSAC HSG + +G + F+SM +
Sbjct:  331 GKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTR 441          

HSP 2 Score: 28.4906 bits (62), Expect = 4.497e-20
Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  347 KHLTAWHRDYSMKPNMEHYACM 412
            K   +  RDY + P  EHYACM
Sbjct:  434 KQFESMTRDYGVVPEEEHYACM 455          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            GQ+ HCQL+K     +  + +AL+DMYAKCG  +DA + FD    + V  W S+I  Y  +G   +AL++   M    ++PNY+TF+G LSAC H+GL+  G + F+ M
Sbjct:  574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682          

HSP 2 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 36/133 (27.07%), Postives = 67/133 (50.38%), Query Frame = 1
Query:    7 LALCLLILF--PGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYGT 399
            L+ C ++ F   G+Q+H  +++     D  L + L+D Y KCG++  A ++F+ M  K + +WT+++ GY +N    +A+ELF  M +  ++P+       L++C     L  G +      +  L    Y T
Sbjct:  256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVT 388          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            L  L  G   H   + +    +  + +AL+DMY KCGK+D A RVFD M ++ + +W +M+ G+G +G   +AL LF  MQE  V P+ VT L  LSAC HSGL+ +G++ F+SM++
Sbjct:  422 LAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSR 538          
The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP192_ARATH2.048e-2041.96Pentatricopeptide repeat-containing protein At2g37... [more]
PPR69_ARATH3.013e-2045.13Pentatricopeptide repeat-containing protein At1g32... [more]
PP341_ARATH3.434e-2044.25Pentatricopeptide repeat-containing protein At4g30... [more]
PPR83_ARATH3.935e-2041.32Putative pentatricopeptide repeat-containing prote... [more]
PP210_ARATH4.458e-2038.53Pentatricopeptide repeat-containing protein At3g03... [more]
PP151_ARATH4.477e-2038.46Pentatricopeptide repeat-containing protein At2g13... [more]
PP398_ARATH4.478e-2041.53Pentatricopeptide repeat-containing protein At5g27... [more]
PPR14_ARATH4.497e-2042.34Pentatricopeptide repeat-containing protein At1g06... [more]
PP357_ARATH5.139e-2041.28Pentatricopeptide repeat-containing protein At4g39... [more]
PP237_ARATH5.139e-2041.88Pentatricopeptide repeat-containing protein At3g16... [more]

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Properties
Property NameValue
Genbank descriptionC04030C07SK FlavFr1 Citrus clementina cDNA clone C04030C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bp
TTGGAGCTTGCTCTGTGTTTACTGATTTTGTTTCCCGGTCAACAGGTTCA
TTGCCAACTTATTAAGAATGTGCCCTTTGAGGATGTAAAACTGGGAAGTG
CTCTTGTGGACATGTATGCAAAATGTGGAAAGATTGATGATGCTCCAAGA
GTTTTTGACCACATGCAACAAAAGATCGTGTTTACATGGACTTCCATGAT
TGATGGTTATGGAAAGAATGGGAACCCGAATCAAGCACTTGAGCTCTTTT
GTATGATGCAAGAATGTTGCGTCCAACCCAATTATGTTACATTCCTTGGT
GCTCTCTCGGCTTGTGGACACTCTGGTTTACTTGCTAAAGGTCGCGAAAC
ATTTGACAGCATGGCACAGAGATTACTCAATGAAACCGAATATGGAACAT
TATGCTTGTATGGCCCAT
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