CX293319
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.048e-20 Identity = 47/112 (41.96%), Postives = 72/112 (64.29%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 G+ VHCQ + + + ++L+ MY KCG + DA R+FD K V +W SMI GY ++G QA+ELF MM + +P+ +T+LG LS+C H+GL+ +GR+ F+ MA+ Sbjct: 240 GRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAE 351 HSP 2 Score: 22.7126 bits (47), Expect = 2.048e-20 Identity = 5/14 (35.71%), Postives = 11/14 (78.57%), Query Frame = 2 Query: 371 DYSMKPNMEHYACM 412 ++ +KP + HY+C+ Sbjct: 351 EHGLKPELNHYSCL 364 HSP 3 Score: 78.1814 bits (191), Expect = 1.448e-14 Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGR 345 G HC +K DV LGS+LV +Y G++++A +VF+ M ++ V +WT+MI G+ + + L+L+ M++ PN TF LSAC SG L +GR Sbjct: 139 GSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGR 241
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.013e-20 Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPF--EDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 G+ +HC + K D+ L ++LV MYAKCG I+DA +F M QK +W SMI G +G ++AL LF M + +PN VTFLG LSAC HSGL+ +G E F +M + Sbjct: 485 GKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAMKE 597
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.434e-20 Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFED-VKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372 G+ VH L+++ FE + + +AL+ MYAKCG I +A R+FD M +K TW +MI GYG +G +AL +F M + P VTFL L AC H+GL+ +G E F+SM R Sbjct: 439 GKWVH-DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550 HSP 2 Score: 24.6386 bits (52), Expect = 3.434e-20 Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 2 Query: 365 HRDYSMKPNMEHYACM 412 HR Y +P+++HYACM Sbjct: 549 HR-YGFEPSVKHYACM 563 HSP 3 Score: 68.1662 bits (165), Expect = 1.499e-11 Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 1 Query: 46 VHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYGTLCLYG 414 +H +K+ + +AL +Y+K +I+ A ++FD +K + +W +MI GY +NG A+ LF MQ+ PN VT LSAC G L+ G+ D + + Y + L G Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIG 463
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.935e-20 Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHM-QQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYG 396 GQQ+H ++ + ++V+L +AL+DMYAKCG I D+ RVF + ++ + +WTSM+ GYG +G +A+ELF M ++P+ + F+ LSAC H+GL+ KG + F+ M E+EYG Sbjct: 332 GQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVM------ESEYG 446
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 4.458e-20 Identity = 42/109 (38.53%), Postives = 72/109 (66.06%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 G+++HC L++ ++++G+AL++MY+KCG ++++ RVF+ M ++ V TWT MI YG G +ALE F M++ + P+ V F+ + AC HSGL+ +G F+ M Sbjct: 528 GKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKM 636 HSP 2 Score: 22.7126 bits (47), Expect = 4.458e-20 Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 2 Query: 374 YSMKPNMEHYACM 412 Y + P +EHYAC+ Sbjct: 640 YKIDPMIEHYACV 652
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.477e-20 Identity = 45/117 (38.46%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 37 GQQVHCQLIKNV------PFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 G Q H ++K+ +D+ +G++L+DMY KCG +++ VF M ++ +W +MI G+ +NG N+ALELF M E +P+++T +G LSACGH+G + +GR F SM + Sbjct: 405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTR 521 HSP 2 Score: 23.483 bits (49), Expect = 4.477e-20 Identity = 7/21 (33.33%), Postives = 13/21 (61.90%), Query Frame = 2 Query: 350 HLTAWHRDYSMKPNMEHYACM 412 + ++ RD+ + P +HY CM Sbjct: 515 YFSSMTRDFGVAPLRDHYTCM 535 HSP 3 Score: 91.6633 bits (226), Expect = 1.266e-18 Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348 G QVH + K+ DV +GSALVDMY+KCG ++DA RVFD M + V +W S+I + +NG +AL++F MM E V+P+ VT +SAC + G+E Sbjct: 171 GVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.478e-20 Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQR 372 L L G+Q+H + ++ D L SAL+DMY+KCG +A R+F+ + +K V +WT MI YG +G P +AL F MQ+ ++P+ VT L LSACGH+GL+ +G + F M + Sbjct: 423 LAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSK 540 HSP 2 Score: 23.8682 bits (50), Expect = 4.478e-20 Identity = 8/22 (36.36%), Postives = 13/22 (59.09%), Query Frame = 2 Query: 347 KHLTAWHRDYSMKPNMEHYACM 412 K + Y ++P +EHY+CM Sbjct: 532 KFFSQMRSKYGIEPIIEHYSCM 553 HSP 3 Score: 72.7886 bits (177), Expect = 6.084e-13 Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 1 Query: 28 LFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETE 390 L G+ +H +I++V D+ + +L+D+Y KCG+ + A VF Q+ + +W MI Y GN +A+E++ M V+P+ VTF L AC L KG++ S+++ L E Sbjct: 325 LLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDE 445 HSP 4 Score: 71.2478 bits (173), Expect = 1.770e-12 Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 1 Query: 31 FPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEY 393 F G+ +H ++K+ DV + S+LV MYAK +++ +VFD M ++ V +W ++I + ++G +ALELF M+ +PN V+ A+SAC L +G+E ++ EY Sbjct: 124 FLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 244
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.497e-20 Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 G+ VH +I+N D ++ +DMYA+CG I A VFD M ++ V +W+SMI+ +G NG +AL+ F M+ V PN VTF+ LSAC HSG + +G + F+SM + Sbjct: 331 GKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTR 441 HSP 2 Score: 28.4906 bits (62), Expect = 4.497e-20 Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = 2 Query: 347 KHLTAWHRDYSMKPNMEHYACM 412 K + RDY + P EHYACM Sbjct: 434 KQFESMTRDYGVVPEEEHYACM 455
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20 Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 GQ+ HCQL+K + + +AL+DMYAKCG +DA + FD + V W S+I Y +G +AL++ M ++PNY+TF+G LSAC H+GL+ G + F+ M Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682 HSP 2 Score: 67.781 bits (164), Expect = 1.957e-11 Identity = 36/133 (27.07%), Postives = 67/133 (50.38%), Query Frame = 1 Query: 7 LALCLLILF--PGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETEYGT 399 L+ C ++ F G+Q+H +++ D L + L+D Y KCG++ A ++F+ M K + +WT+++ GY +N +A+ELF M + ++P+ L++C L G + + L Y T Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVT 388
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20 Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 L L G H + + + + +AL+DMY KCGK+D A RVFD M ++ + +W +M+ G+G +G +AL LF MQE V P+ VT L LSAC HSGL+ +G++ F+SM++ Sbjct: 422 LAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSR 538 The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 188
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bpback to top |