CX293319

Overview
NameCX293319
Unique NameCX293319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.421e-19
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            G+Q+H Q+IK     DV + S LVDMY+KCG + D+  +F+   ++   TW +MI GY  +G   +A++LF  M    ++PN+VTF+  L AC H GL+ KG E F  M
Sbjct:  622 GKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMM 730          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.065e-19
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 LELALCLLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            L+    L  L  G+ +H  +++      + + SALV MY +CGK++   RVFD M  + V +W S+I  YG +G   +A+++F  M      P  VTF+  L AC H GL+ +G+  F++M
Sbjct:  292 LQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETM 412          

HSP 2 Score: 30.8018 bits (68), Expect = 8.065e-19
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  356 TAWHRDYSMKPNMEHYACM 412
            T W RD+ +KP +EHYACM
Sbjct:  411 TMW-RDHGIKPQIEHYACM 428          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.070e-19
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            L  L  G+Q+H  + K+    +V + S+ VDMYAKCG + ++  +F  +Q+K +  W ++I G+ K+  P + + LF  MQ+  + PN VTF   LS CGH+GL+ +GR  F  M
Sbjct:  276 LAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM 390          

HSP 2 Score: 24.2534 bits (51), Expect = 8.070e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  374 YSMKPNMEHYACM 412
            Y + PN+ HY+CM
Sbjct:  394 YGLSPNVVHYSCM 406          

HSP 3 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348
            +++HC  +K     ++ +G+AL+D+YAKCG I DA +VF+ MQ K   TW+SM+ GY +N N  +AL L+   Q   ++ N  T    + AC +   L +G++
Sbjct:  182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ 284          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.692e-19
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETE 390
            G  VH  LI+        +G++LVDMYAKCG I+ + + F  +  K + +W +M+  Y  +G  + A+ LF  MQE  ++P+ V+FL  LSAC H+GL+ +G+  F+ M +R   E E
Sbjct:  623 GMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAE 740          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            G+ VH    KN    D  LG+AL+DMY+KCG + DA +VFD MQ K + TW SMI   G +G   +AL LF  M +E  V+P+ +TF+G LSAC ++G +  G   F  M Q
Sbjct:  270 GRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQ 381          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            G+ +H    +    +   + +AL++MY+KCG I  A ++F  M+ K V +W++MI GY  +GN + A+E F  MQ   V+PN +TFLG LSAC H G+  +G   FD M Q
Sbjct:  260 GKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.362e-18
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            G+ +H   +K      + +GSALVDMY KCG I+D+ + FD M +K + T  S+I GY   G  + AL LF  M  + C   PNY+TF+  LSAC  +G +  G + FDSM
Sbjct:  329 GRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSM 439          

HSP 2 Score: 22.3274 bits (46), Expect = 1.362e-18
Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  374 YSMKPNMEHYACM 412
            Y ++P  EHY+C+
Sbjct:  443 YGIEPGAEHYSCI 455          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            +Q H  LI+N    ++   +ALVD Y+K G++D A  VFD + +K + +W +++ GY  +G    A++LF  M    V PN+VTFL  LSAC +SGL  +G E F SM++
Sbjct:  345 KQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSE 454          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   82 DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363
            D  LGSAL+DMY+KCG I+ A  VF+ + ++ V TW++MI+G+  +G    A++ FC M++  V+P+ V ++  L+AC H GL+ +GR  F  M
Sbjct:  308 DDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQM 401          
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP359_ARATH (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369
            GQ +H  + +     ++ L +AL+DMYAKCG ++ +  +FD   QK    W  MI GYG +G+   A+ LF  M+E  V+P   TFL  LSAC H+GL+ +G++ F  M Q
Sbjct:  552 GQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQ 662          
The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP207_ARATH7.421e-1942.20Pentatricopeptide repeat-containing protein At3g02... [more]
PP265_ARATH8.065e-1934.71Pentatricopeptide repeat-containing protein At3g46... [more]
PP364_ARATH8.070e-1938.26Pentatricopeptide repeat-containing protein At5g04... [more]
PP195_ARATH9.692e-1938.14Pentatricopeptide repeat-containing protein At2g39... [more]
PP257_ARATH1.266e-1845.54Pentatricopeptide repeat-containing protein At3g26... [more]
PP165_ARATH1.266e-1840.54Pentatricopeptide repeat-containing protein At2g20... [more]
PP312_ARATH1.362e-1842.34Pentatricopeptide repeat-containing protein At4g14... [more]
PP427_ARATH1.653e-1840.91Pentatricopeptide repeat-containing protein At5g50... [more]
PP425_ARATH1.653e-1842.55Pentatricopeptide repeat-containing protein At5g48... [more]
PP359_ARATH1.653e-1840.54Pentatricopeptide repeat-containing protein At4g39... [more]

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Properties
Property NameValue
Genbank descriptionC04030C07SK FlavFr1 Citrus clementina cDNA clone C04030C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bp
TTGGAGCTTGCTCTGTGTTTACTGATTTTGTTTCCCGGTCAACAGGTTCA
TTGCCAACTTATTAAGAATGTGCCCTTTGAGGATGTAAAACTGGGAAGTG
CTCTTGTGGACATGTATGCAAAATGTGGAAAGATTGATGATGCTCCAAGA
GTTTTTGACCACATGCAACAAAAGATCGTGTTTACATGGACTTCCATGAT
TGATGGTTATGGAAAGAATGGGAACCCGAATCAAGCACTTGAGCTCTTTT
GTATGATGCAAGAATGTTGCGTCCAACCCAATTATGTTACATTCCTTGGT
GCTCTCTCGGCTTGTGGACACTCTGGTTTACTTGCTAAAGGTCGCGAAAC
ATTTGACAGCATGGCACAGAGATTACTCAATGAAACCGAATATGGAACAT
TATGCTTGTATGGCCCAT
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