CX293319
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 7.421e-19 Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 G+Q+H Q+IK DV + S LVDMY+KCG + D+ +F+ ++ TW +MI GY +G +A++LF M ++PN+VTF+ L AC H GL+ KG E F M Sbjct: 622 GKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMM 730
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.065e-19 Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = 1 Query: 1 LELALCLLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 L+ L L G+ +H +++ + + SALV MY +CGK++ RVFD M + V +W S+I YG +G +A+++F M P VTF+ L AC H GL+ +G+ F++M Sbjct: 292 LQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETM 412 HSP 2 Score: 30.8018 bits (68), Expect = 8.065e-19 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2 Query: 356 TAWHRDYSMKPNMEHYACM 412 T W RD+ +KP +EHYACM Sbjct: 411 TMW-RDHGIKPQIEHYACM 428
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 8.070e-19 Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 1 Query: 19 LLILFPGQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 L L G+Q+H + K+ +V + S+ VDMYAKCG + ++ +F +Q+K + W ++I G+ K+ P + + LF MQ+ + PN VTF LS CGH+GL+ +GR F M Sbjct: 276 LAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM 390 HSP 2 Score: 24.2534 bits (51), Expect = 8.070e-19 Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 2 Query: 374 YSMKPNMEHYACM 412 Y + PN+ HY+CM Sbjct: 394 YGLSPNVVHYSCM 406 HSP 3 Score: 79.337 bits (194), Expect = 6.501e-15 Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 1 Query: 40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRE 348 +++HC +K ++ +G+AL+D+YAKCG I DA +VF+ MQ K TW+SM+ GY +N N +AL L+ Q ++ N T + AC + L +G++ Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ 284
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP195_ARATH (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.692e-19 Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQRLLNETE 390 G VH LI+ +G++LVDMYAKCG I+ + + F + K + +W +M+ Y +G + A+ LF MQE ++P+ V+FL LSAC H+GL+ +G+ F+ M +R E E Sbjct: 623 GMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAE 740
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18 Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 G+ VH KN D LG+AL+DMY+KCG + DA +VFD MQ K + TW SMI G +G +AL LF M +E V+P+ +TF+G LSAC ++G + G F M Q Sbjct: 270 GRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQ 381
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18 Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 G+ +H + + + +AL++MY+KCG I A ++F M+ K V +W++MI GY +GN + A+E F MQ V+PN +TFLG LSAC H G+ +G FD M Q Sbjct: 260 GKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.362e-18 Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 G+ +H +K + +GSALVDMY KCG I+D+ + FD M +K + T S+I GY G + AL LF M + C PNY+TF+ LSAC +G + G + FDSM Sbjct: 329 GRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSM 439 HSP 2 Score: 22.3274 bits (46), Expect = 1.362e-18 Identity = 6/13 (46.15%), Postives = 10/13 (76.92%), Query Frame = 2 Query: 374 YSMKPNMEHYACM 412 Y ++P EHY+C+ Sbjct: 443 YGIEPGAEHYSCI 455
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18 Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1 Query: 40 QQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 +Q H LI+N ++ +ALVD Y+K G++D A VFD + +K + +W +++ GY +G A++LF M V PN+VTFL LSAC +SGL +G E F SM++ Sbjct: 345 KQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSE 454
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18 Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1 Query: 82 DVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSM 363 D LGSAL+DMY+KCG I+ A VF+ + ++ V TW++MI+G+ +G A++ FC M++ V+P+ V ++ L+AC H GL+ +GR F M Sbjct: 308 DDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQM 401
BLAST of CX293319 vs. ExPASy Swiss-Prot
Match: PP359_ARATH (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 1.653e-18 Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1 Query: 37 GQQVHCQLIKNVPFEDVKLGSALVDMYAKCGKIDDAPRVFDHMQQKIVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHSGLLAKGRETFDSMAQ 369 GQ +H + + ++ L +AL+DMYAKCG ++ + +FD QK W MI GYG +G+ A+ LF M+E V+P TFL LSAC H+GL+ +G++ F M Q Sbjct: 552 GQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMHQ 662 The following BLAST results are available for this feature:
BLAST of CX293319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 188
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293319 ID=CX293319; Name=CX293319; organism=Citrus clementina; type=EST; length=418bpback to top |