CX293484

Overview
NameCX293484
Unique NameCX293484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length307
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.443e-38
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 2
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSGL S VLFEAN LA+L+E+LS +F EVM GK E+TDHLTHKLKHHPGQIEAAAIMEHIL+GSSY+  AKKL E+DPL KPKQDRYALRTS
Sbjct:  252 GLAMVNGTAVGSGLASTVLFEANILAILAEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKHAKKLGELDPLMKPKQDRYALRTS 353          
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.163e-38
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 2
Query:   38 GLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G+ SMVLFEAN LA+LSE+LS IFAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A+KLHE+DPL KPKQDRYALRTS
Sbjct:  258 GMASMVLFEANVLAVLSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKQDRYALRTS 347          
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 4.643e-37
Identity = 77/102 (75.49%), Postives = 83/102 (81.37%), Query Frame = 2
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGS L S VL++AN L + SE+ S +FAEVM GK EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  A  LH+IDPL KPKQDRYALRTS
Sbjct:  243 GLALVNGTAVGSALASTVLYDANILVVFSEVASAMFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEALHLHKIDPLQKPKQDRYALRTS 344          
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.327e-35
Identity = 77/102 (75.49%), Postives = 85/102 (83.33%), Query Frame = 2
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGTAVGSG+ SMVLFEAN LALL+E+LS +FAEVM GK EFTDHL HKLK+HPGQIEAAAIMEHILDGSSYV  A KL + DPL KP++DRYAL TS
Sbjct:  251 GLALVNGTAVGSGVASMVLFEANILALLAEVLSAVFAEVMQGKPEFTDHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNA-KLQQPDPLQKPRKDRYALVTS 351          
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.346e-35
Identity = 72/102 (70.59%), Postives = 86/102 (84.31%), Query Frame = 2
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGT+VGS L + V+F+AN LA+LSE+LS +F EVM GK E+TDHLTHKLKHHPG IEAAAIMEHIL GSS+++ AKK++E+DPL KPKQDRYALRTS
Sbjct:  242 GLAIVNGTSVGSALAATVMFDANILAVLSEVLSAVFCEVMNGKPEYTDHLTHKLKHHPGSIEAAAIMEHILAGSSFMSHAKKVNEMDPLLKPKQDRYALRTS 343          
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.651e-34
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 2
Query:    2 GSCSCNGTAVGSGLISMVLFEANNLALLSEILSDIFAEVMLGKSEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            G    NGT+VG+ L S+V F+AN LALLSE++S +F EVM GK EFTD LTHKLKHHPGQ+EAAAIME++LDGSSY+  A KLHE++PL KPKQDRY LRTS
Sbjct:  258 GLAIVNGTSVGAALASIVCFDANVLALLSEVISAMFCEVMNGKPEFTDPLTHKLKHHPGQMEAAAIMEYVLDGSSYMKHAAKLHEMNPLQKPKQDRYGLRTS 359          
BLAST of CX293484 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.643e-24
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 2
Query:  140 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLHKPKQDRYALRTS 307
            TDHLTHKLKHHPGQIEAAAIMEHILDGSSYV  AKKLHE+DPL KPKQDRYALRTS
Sbjct:    1 TDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTS 56          
The following BLAST results are available for this feature:
BLAST of CX293484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PAL2_ORYSI1.443e-3877.45Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL1_IPOBA7.163e-3885.56Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PAL3_ARATH4.643e-3775.49Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL3_PHAVU3.327e-3575.49Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ4.346e-3570.59Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PINTA1.651e-3469.61Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PALY_VITVI2.643e-2492.86Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]

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Properties
Property NameValue
Genbank descriptionC04032C06SK FlavFr1 Citrus clementina cDNA clone C04032C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293484 ID=CX293484; Name=CX293484; organism=Citrus clementina; type=EST; length=307bp
AGGGTCTTGCTCTTGTAATGGCACTGCTGTTGGTTCTGGCCTGATTTCTA
TGGTTCTGTTTGAAGCTAACAACCTTGCTCTGTTATCAGAAATTTTGTCA
GATATTTTTGCTGAAGTCATGCTAGGCAAAAGTGAGTTCACCGATCACTT
GACACACAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCTGCTATAA
TGGAACATATCCTCGATGGCAGCTCTTATGTTAACGTGGCTAAAAAGCTG
CATGAGATTGATCCTCTGCATAAGCCGAAACAGGATCGTTATGCCCTGAG
AACTTCA
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