CX293819

Overview
NameCX293819
Unique NameCX293819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12843 contig Ccv1_Contig12843:372..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.127e-14
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   20 PRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIAKTKVERK--VIDVQI 466
            PR    D+    + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+      G  FSS   R+ LP+   K D +KAE+KNGVL +++ K K E +  VI+V++
Sbjct:   57 PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.008e-12
Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:   14 RRPRRTALDISPFG--LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAE--EAGGASFSSYDTRLQL-PDNCEKDKVKAELKNGVLYISIAKTKVERK 448
            RRP R A   + F     DP    +++ ++L  MD L        GR+   G   +R  W+ KE E  + +R DMPGL             LVIKGE   E  E  GA+ + Y  R++L P+    D++KAE+KNGVL + + K K E++
Sbjct:   69 RRPTRDATMPAFFSDVFRDPFSAPQSLGRLLSLMDDLATPA----GRA---GAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQR 211          
BLAST of CX293819 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  191 IKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIAKTKVERK 448
            +KE+++  K+R+++PGL             L IKG+H+AEE  G+          S+  Y+T L LPD+ + + +KAELKNGVL + I +T+  +K
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKK 224          
The following BLAST results are available for this feature:
BLAST of CX293819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS22M_PEA9.127e-1435.67Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS24M_ORYSJ5.008e-1234.6724.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ARATH7.232e-1136.4626.5 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC05001A04SK FlavSen1 Citrus clementina cDNA clone C05001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293819 ID=CX293819; Name=CX293819; organism=Citrus clementina; type=EST; length=503bp
AACCCAAGTGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTCACCTT
TCGGTTTGATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTG
GACACAATGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAG
CCGGGCTGGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGG
AGGAAAATGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAG
GATGTCAAAGTGTCGGTGGAAGATGAAGTCCTTGTCATTAAAGGAGAGCA
CAGGGCAGAAGAAGCTGGAGGTGCAAGTTTTAGCTCTTACGATACTCGTC
TCCAGCTTCCTGATAACTGTGAGAAAGATAAGGTCAAGGCAGAGCTCAAG
AATGGTGTTCTTTACATTTCAATTGCTAAGACAAAGGTGGAGCGCAAGGT
CATTGATGTTCAAATTCTGTAATTATAATAATGAGTGCCTAGCGAAATGT
GTA
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