CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALB_RAT (Ras-related protein Ral-B OS=Rattus norvegicus GN=Ralb PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 50/147 (34.01%), Postives = 90/147 (61.22%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL + R+V  EEA+  A+E G+ ++ETSAKT
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARGKAEEWGVQYVETSAKT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB36_HUMAN (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 3
Query:  102 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKT 539
            +K+V++GD+  GK+SL+ RF K  F    ++TIG  F  +   +       +IWDTAGQE++  +A  YYRGA   I  +D+T+  + E  ++W+++ L+     +  + L G K DLL        EA A   A+E    +   SAKT
Sbjct:  124 SKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKT 272          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K+V+LGD  +GK+SL   F +  F +  + TIG  FF + + +  +  V  +IWD  GQ     +   Y  GA   ++VYDITN  SFE  + W   V+++  +     ++AL GNK DL   R +  E+   + QENG      SAKT
Sbjct:   14 KIVVLGDGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKT 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB28_HUMAN (Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 53/149 (35.57%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K+V+LGD  +GK+SL   F +  F +  + TIG  FF + + +  +  V  +IWD  GQ     +   Y  GA   ++VYDITN  SFE  + W   V+++  +     ++AL GNK DL   R +  E+   + QENG      SAKT
Sbjct:   14 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKT 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB40B_MOUSE (Ras-related protein Rab-40B OS=Mus musculus GN=Rab40b PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 47/142 (33.10%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETS 530
            K +L+GD   GK  ++     G          G    + T+ ++   VK ++WDT+GQ R+ ++   Y RGA   ++VYDI N+ SF+   +W++E+     P +   L GN+  L   R+V  E+AQAYA+  G+ F E S
Sbjct:   16 KFLLVGDSDVGKGEILASLQDGAAESPYGHPAGIDHKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVVLVYDIANRWSFDGINRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 47/151 (31.13%), Postives = 88/151 (58.28%), Query Frame = 3
Query:   87 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            NKN   +L ++GD G GK+++  +F+   F+ + + TI  ++  Q + V+D +   +I DTAGQ+   ++   + R     ++VY IT ++SF +   + +++ +     ++ + + GNK+DL++ R+VT  E +  AQ  G+ FME SAK
Sbjct:   29 NKNNIVQLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIEDSYRKQ-ICVSDKSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQVTYHEGKELAQRLGMSFMEVSAK 178          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 50/156 (32.05%), Postives = 91/156 (58.33%), Query Frame = 3
Query:   84 GNKNI--NAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            GNK+     K+V++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D     +I DTAGQE Y ++   Y R     ++VY +T++ SF+    + Q++Q   + + + + + GNK DL + R+V+ E+    A++    F+ETSAK A
Sbjct:    3 GNKSTIREYKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYRKQVV-IDDKVSILDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQA 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 49/144 (34.03%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 533
            K+V+LG  G GKS++ ++F+  QF ++ + TI  A+ +Q + +++     +I DTAGQ  + ++   Y RG    II Y +T++ SF+ A K+ + + Q +    + + L GNK DL   R+V+ EE    A++    F ETSA
Sbjct:   22 KVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMTLARDYNCAFFETSA 164          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 47/157 (29.94%), Postives = 95/157 (60.51%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA+  N N+  +L ++GD G GK+++ ++F+   F+ + + TI  ++  Q + ++D     +I DTAGQ+   ++   + R     ++VY IT+++SF++ + + ++ ++     ++ + + GNK+DL D R+VT +E +  A+  G+ FME SAK+
Sbjct:    1 MASYKNNNL-VRLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTYQEGKDLARCLGMSFMEVSAKS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASW_DICDI (Ras-like protein rasW OS=Dictyostelium discoideum GN=rasW PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 50/157 (31.85%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   81 TGNKNINA-KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            T  KN N   L ++GD G GK+++ ++F+   F+ + + TI  ++  Q L V+D     +I DTAGQ+   ++   + R     I+VY +T+++SF++ + + +++ +   + ++ + + GNK DL D R+VT +E +  A+  G+ FME SAK  T
Sbjct:    2 TSYKNNNVISLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCL-VDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQIQFFREQIIRVLDSDDVPIMMIGNKIDLDDERQVTFQEGKDLARCLGMSFMEVSAKNRT 157          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALB_RAT1.624e-1734.01Ras-related protein Ral-B OS=Rattus norvegicus GN=... [more]
RAB36_HUMAN1.624e-1734.23Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]
RAB28_PONAB1.624e-1735.57Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
RAB28_HUMAN1.624e-1735.57Ras-related protein Rab-28 OS=Homo sapiens GN=RAB2... [more]
RB40B_MOUSE2.121e-1733.10Ras-related protein Rab-40B OS=Mus musculus GN=Rab... [more]
RASV_DICDI2.121e-1731.13Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RAS1_YEAST2.121e-1732.05Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]
RIT2_RAT2.770e-1734.03GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
RASZ_DICDI2.770e-1729.94Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]
RASW_DICDI2.770e-1731.85Ras-like protein rasW OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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