CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKS 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKS 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 55/156 (35.26%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA  G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKS 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB34_RAT (Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 57/162 (35.19%), Postives = 91/162 (56.17%), Query Frame = 3
Query:   63 EHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKT 539
            EH   T G K   +K++++GD+  GK+ L+ RF K  F +  ++TIG  F  +   V       ++WDTAGQER+  +A  YYRGA A IIV+++ + AS E +K+W+ +   + +P N+++ L G+K DL    + +  E  A   AQE    +   S+ T
Sbjct:   42 EHRTGTVGFKI--SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHSKQWLADALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWSVSSLT 201          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7L_PONAB (Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20
Identity = 55/158 (34.81%), Postives = 96/158 (60.76%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            G+++   K++++GD   GK+SLV R+ +  F +  +ST+G  F  + L  +D   V+ ++WD AGQER+ S+  +YYR A+A +I++D+TN  +F  +++W Q+L ++     G P   + LA NK D L    V+ ++   +++ENG   + ETS K
Sbjct:    2 GSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA-NKCD-LSPWAVSRDQIDRFSKENGFTGWTETSVK 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20
Identity = 55/158 (34.81%), Postives = 96/158 (60.76%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            G+++   K++++GD   GK+SLV R+ +  F +  +ST+G  F  + L  +D   V+ ++WD AGQER+ S+  +YYR A+A +I++D+TN  +F  +++W Q+L ++     G P   + LA NK D L    V+ ++   +++ENG   + ETS K
Sbjct:    2 GSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLA-NKCD-LSPWAVSRDQIDRFSKENGFTGWTETSVK 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    ++ + +    + + L GNK DL   R+V + E +A AQE G  FMETSAK+
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKS 149          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    ++ + +    + + L GNK DL   R+V + E +A AQE G  FMETSAK+
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKS 149          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 57/146 (39.04%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    ++ + +    + + L GNK DL   R+V + E +A AQE G  FMETSAK+
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKS 149          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB34_MOUSE (Ras-related protein Rab-34 OS=Mus musculus GN=Rab34 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   63 EHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQA 491
            EH   T G K   +K++++GD+  GK+ L+ RF K  F +  ++TIG  F  +   V       ++WDTAGQER+  +A  YYRGA A IIV+++ + AS E  K+W+ +   + +P N+++ L G+K DL    + +  E  A
Sbjct:   42 EHRTGTVGFKI--SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLTDALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDA 183          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_CHICK3.496e-2035.26GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA3.496e-2035.26GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN3.496e-2035.26GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAB34_RAT4.566e-2035.19Ras-related protein Rab-34 OS=Rattus norvegicus GN... [more]
RAB7L_PONAB5.964e-2034.81Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB... [more]
RAB7L_HUMAN5.964e-2034.81Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB... [more]
RAP2C_MOUSE7.789e-2039.04Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN7.789e-2039.04Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN7.789e-2039.04Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RAB34_MOUSE7.789e-2036.11Ras-related protein Rab-34 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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