CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 64/147 (43.54%), Postives = 95/147 (64.63%), Query Frame = 3
Query:   96 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            + AK+VLLG+   GK+SLVLR+ + +F +  E T+ A+F  + L +    ++  IWDTAGQERYH+L P+YYR +  AIIVYDIT++ SF +A+ W++EL+      + + + GNK DL   R V+ ++A  YA+  G     TSAK
Sbjct:   15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAK 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 65/147 (44.22%), Postives = 95/147 (64.63%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ +N  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T++ +FE  ++W+QE+      N+   L GNK+DL+  + V    A+A+A    + F+ETSAK +T
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQST 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.867e-30
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T  +   TVK +IWDTAGQER+ ++   YYRGA   IIVYD+T+Q SF   K+W+QE+       +   L GNK+D++D + V    A+ +A    + F+ETSAK +T
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDST 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.867e-30
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K ++ G    GKSSL+L+F + +F    ++TIG  F ++++ ++ + +K EIWDTAGQE + S+   YYRGA  A++ YDIT + SF+    W+ E++   +PN+V+AL GNK D  D R +T EE    A+EN + F ETSAK
Sbjct:    7 KCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAK 150          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.867e-30
Identity = 64/144 (44.44%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+L+GD   GKS L+LRF    +I+   STIG  F  +T+  +  T+K +IWDTAGQER+ ++   YYRGA   IIVYD T   SF   K+W+ E+    N ++   L GNK D+++++ V+ E  +A A E G+ F+ETSAK
Sbjct:   10 KLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAK 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.357e-30
Identity = 60/144 (41.67%), Postives = 94/144 (65.28%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+VL+G+ G GK+ LV RF +G F   Q +TIG  F  +T+ +N   VK +IWDTAGQER+ S+   YYR A A I+ YDIT + SF    +W++E++   +  ++  L GNK DL + R+V+ + A+ +++   ++++ETSAK
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 6.357e-30
Identity = 60/144 (41.67%), Postives = 94/144 (65.28%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+VL+G+ G GK+ LV RF +G F   Q +TIG  F  +T+ +N   VK +IWDTAGQER+ S+   YYR A A I+ YDIT + SF    +W++E++   +  ++  L GNK DL + R+V+ + A+ +++   ++++ETSAK
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.357e-30
Identity = 60/144 (41.67%), Postives = 94/144 (65.28%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+VL+G+ G GK+ LV RF +G F   Q +TIG  F  +T+ +N   VK +IWDTAGQER+ S+   YYR A A I+ YDIT + SF    +W++E++   +  ++  L GNK DL + R+V+ + A+ +++   ++++ETSAK
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  TVK +IWDTAGQER+ ++   YYRGA    +VYD+T+  SF   K+W+QE+       +   L GNK+D+ D + V    A+ +A   G+ F+ETSAK A+
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNAS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.302e-30
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            K++L+GD   GK+ +V RF  G F   Q++TIG  F  + + +N   VK ++WDTAGQER+ ++   YYR A  AII YDIT + SFE    W+ E +  G  N++M L GNK+DL + R++  EEA   A+++GL   +ETSAK
Sbjct:   17 KIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAK 161          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB21_GEOCY3.727e-3043.54Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RAB1A_DICDI3.727e-3044.22Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPT1_SCHPO4.867e-3044.90GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RABQ_DICDI4.867e-3043.06Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RABD1_ARATH4.867e-3044.44Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB30_MOUSE6.357e-3041.67Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN6.357e-3041.67Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN6.357e-3041.67Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
YPT1_NEUCR8.302e-3043.54GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB19_XENTR8.302e-3044.14Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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