CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLVL+GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE++  L   YY     AII++D+T + +++    W ++L A+   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+
Sbjct:   11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-ARVCENIPIVLCGNKVDVKD-RKVKAKTITFHRKKN-LQYYDISAKS 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A +  + ++ETSAKT
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 160          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A +  + ++ETSAKT
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 160          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 51/146 (34.93%), Postives = 87/146 (59.59%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT   SF     + ++ L+ + + N+   L GNK+DL D R+V+ EEA+  A +  + ++ETSAKT
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 160          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALB_PONAB (Ras-related protein Ral-B OS=Pongo abelii GN=RALB PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 50/147 (34.01%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL + R+V  EEA++ A+E G+ ++ETSAKT
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALB_MACFA (Ras-related protein Ral-B OS=Macaca fascicularis GN=RALB PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 50/147 (34.01%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL + R+V  EEA++ A+E G+ ++ETSAKT
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 50/147 (34.01%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL + R+V  EEA++ A+E G+ ++ETSAKT
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 48/145 (33.10%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLVL+GD G GK++ V R   G+F+    +T+G        A +   ++F++WDTAGQE++  L   YY      II++D+T++ +++    W ++L  +   N+ + L GNK D+ + RKV A+    + ++N L + + SAK+
Sbjct:    9 KLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKE-RKVKAKTITFHRKKN-LQYYDISAKS 150          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 50/146 (34.25%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++G  G GKS+L ++ ++  FI+  + TI  ++  Q ++++D T   +I DTAGQE Y ++   Y R     + VY IT+++S++    + ++ L+ +    + + L GNKADL   R+V+  E Q  A+     FME+SAK+
Sbjct:    5 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQ-VSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKS 149          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 51/156 (32.69%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA  G      K VL+GD G GK++ V R + G+F +   +T+G          N   ++F +WDTAGQE++  L   YY     A+I++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+
Sbjct:    1 MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKS 153          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_CAEEL9.521e-1835.17GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RALA_SAGOE9.521e-1834.93Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT9.521e-1834.93Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE9.521e-1834.93Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
RALB_PONAB1.243e-1734.01Ras-related protein Ral-B OS=Pongo abelii GN=RALB ... [more]
RALB_MACFA1.243e-1734.01Ras-related protein Ral-B OS=Macaca fascicularis G... [more]
RALB_HUMAN1.243e-1734.01Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
GSP1_YARLI1.243e-1733.10GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RASD_DICDI1.624e-1734.25Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAN_DROME1.624e-1732.69GTP-binding nuclear protein Ran OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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