CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 48/146 (32.88%), Postives = 83/146 (56.85%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++G  G GKS L ++ ++  F++  + TI  ++  Q + +++     ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q+ L+ +      + + GNK DL   R+V+ +E Q  A + G  F+ETSAK+
Sbjct:   10 KLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLEGERQVSKQEGQQLADDFGCKFIETSAKS 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 54/147 (36.73%), Postives = 84/147 (57.14%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GKS+L ++  + QFI   + TI  ++  Q + +++     +I DTAGQE Y ++   Y R     +IVY I ++ASFE    + ++ L+ +      + + GNKADL D  RKV   E +  A+  G  F+ETSAK+
Sbjct:    6 KLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYRKQ-VNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKS 151          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 50/158 (31.65%), Postives = 88/158 (55.70%), Query Frame = 3
Query:   72 MATTGNKNINA---KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            MA    +N++    KL+++GD G GK++ + R + G+F    E T+G   +      N   ++FE WDTAGQE+Y  L   YY     AII++D+T + ++    +W ++L+ +   N+ + L GNK D + +R++  +   +Y ++  L + E SAK
Sbjct:    1 MALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVD-VPSRQIKPKHV-SYHRKKCLQYYEMSAK 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB36_MOUSE (Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  102 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKT 539
            +K+V++GD+  GK+SL+ R  K  F    ++TIG  F  +   +       +IWDTAGQE++  +A  YYRGA   I  +D+T+  + E  ++W++++  +    +  + L G K DLL        EA+A   A E    +   SAKT
Sbjct:   58 SKVVVVGDLYVGKTSLIHRLCKNVFDHDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDVLRENEAGSCFIFLVGTKKDLLSGAACEQAEAEAVHLANEMQAEYWSVSAKT 206          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB32_HUMAN (Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 49/151 (32.45%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            K++++G++G GK+S++ R+V   F +   +TIG  F  + L  +  T V+ ++WD AGQER+ ++  +YY+ A  A +V+DI+  ++FE   KW  +L ++     G+P   + LA NK D       +  +   + +E+G   + ETSAK
Sbjct:   27 KVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLA-NKCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAK 176          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB28_BOVIN (Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 52/149 (34.90%), Postives = 77/149 (51.68%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW---VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K+V+LGD  +GK+SL   F +  F +  + TIG  FF + + +     V  ++WD  GQ     +   Y  GA   ++VYD+TN  SFE  + W   V+++  +     ++AL GNK DL   R V  E+   + QENG      SAKT
Sbjct:   14 KIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGSLNVTLQVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKT 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 45/145 (31.03%), Postives = 82/145 (56.55%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KL+L+GD G GK++LV R + G+F     +T+G          N    + ++WDTAGQERY  L   Y+  +  AII++D+ +  ++   K+W ++L  +   N+ + + GNK D++   K T ++   + ++  ++ +E SAK+
Sbjct:   12 KLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDL-VRVCGNIPIVICGNKVDIM--HKKTWKKGVDFDRKTNIYLIEMSAKS 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN1_ORYSJ (GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 50/145 (34.48%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T++ +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEVSAKS 156          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_BOTFU4.725e-1732.88Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RASC_DICDI4.725e-1736.73Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RAN4_ARATH4.725e-1731.65GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RAN2_ORYSJ4.725e-1734.48GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI4.725e-1734.48GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAB36_MOUSE4.725e-1732.89Ras-related protein Rab-36 OS=Mus musculus GN=Rab3... [more]
RAB32_HUMAN4.725e-1732.45Ras-related protein Rab-32 OS=Homo sapiens GN=RAB3... [more]
RAB28_BOVIN4.725e-1734.90Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 ... [more]
RANL_DROME6.171e-1731.03GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN1_ORYSJ6.171e-1734.48GTP-binding nuclear protein Ran-1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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