CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.581e-31
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK AT
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNAT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.581e-31
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK AT
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNAT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.371e-31
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK AT
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNAT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.402e-31
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK AT
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNAT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.749e-31
Identity = 65/147 (44.22%), Postives = 96/147 (65.31%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K++L+GD G GKS L+LRF    + +   STIG  F  +TL ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD T+Q SF   K+W+ E+      N+   L GNK DL++ + V + +A+++A+  G+ F+ETSAK AT
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNAT 158          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.509e-31
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER+ ++   YYRGA   I+VYD+T++ S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK AT
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNAT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 7.509e-31
Identity = 64/146 (43.84%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   I+VYD+T+  SF   K+W+QE+Q     ++   L GNK DL++ + V    A+ YA   G+ F+ETSAK++
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB41_HUMAN (Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 9.807e-31
Identity = 63/146 (43.15%), Postives = 99/146 (67.81%), Query Frame = 3
Query:  102 AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            +KL+ LG+   GK+S++ RF+   F    ++T+G  F S+T+ + D  V+ ++WDTAGQER+HSL P Y R +  A++VYDITN  SF+   KWV+ ++A+   ++V+ L GNK DL + R+VTAE+ +  ++   + F+ETSAKT
Sbjct:   32 SKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKT 177          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.281e-30
Identity = 63/145 (43.45%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KL+L+GD G GKS L+LRF + QF     +TIG  F  +T+ + +  VK ++WDTAGQER+ ++   YYRGA   ++VYD+T++ SF   + W Q +Q+  N  + + L GNK DL + R V+ E+ QA A + G+ F+E S+KT
Sbjct:   13 KLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKT 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.281e-30
Identity = 66/147 (44.90%), Postives = 93/147 (63.27%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GKS L+LRF    + E   STIG  F  +T+ ++  T+K +IWDTAGQER  ++   YYRGA   I+VYD+T+Q S+   K+W+QE+    + N+   L GNK+DL   + V    A+ +A   G+ F+ETSAK AT
Sbjct:   10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNAT 156          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_HUMAN2.581e-3144.90Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN2.581e-3144.90Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_MOUSE3.371e-3144.90Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_RAT4.402e-3144.90Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1D_DICDI5.749e-3144.22Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1B_MACFA7.509e-3144.22Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_DICDI7.509e-3143.84Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB41_HUMAN9.807e-3143.15Ras-related protein Rab-41 OS=Homo sapiens GN=RAB4... [more]
RYL1_YARLI1.281e-3043.45Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB1B_PIG1.281e-3044.90Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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