CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.084e-29
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            K++L+GD   GK+ +V RF  G F++ Q++TIG  F  ++L +N   VK ++WDTAGQER+ ++   YYR A  AII YDIT + SFE    W+ E    G  N+++ L GNK+DL + R++  EEA   A+++GL   +ETSAK
Sbjct:   17 KIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAK 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.084e-29
Identity = 61/146 (41.78%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GK+ L++RF +  F     STIG  F  +T+ +    +K ++WDTAGQER+ ++   YYRGA   I+VYDIT++ SFE  + W++ ++   +  +   L GNK D+   RKV  E+A   A+E+G+ F ETSAK++
Sbjct:   10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB4A_ECHMU (Probable Ras-related protein Rab-4A OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 64/146 (43.84%), Postives = 95/146 (65.07%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQENGLFFMETSAKT 539
            K +++G+ G GK+ ++ R+ + +F    + TIGA F S+ ++V+   VK +IWDTAGQER+ S+A  YY  A   ++VYDITN+ SF   ++W+ + +    P +V+ L GNK DL D   +VT  EA  +AQENGL F+ETSA T
Sbjct:   11 KFLIIGNAGTGKTCILRRYTERKFFPNTQHTIGAEFGSRVISVDGTHVKIQIWDTAGQERFRSMARSYYHDAVGTLLVYDITNRTSFGAVEQWLGDARHLATPGVVVILVGNKKDLRDTDGQVTHWEANTFAQENGLQFIETSALT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 64/145 (44.14%), Postives = 96/145 (66.21%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K +++G+ G GKS L+ +F++ +F +    TIG  F S+ ++V +  VK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T
Sbjct:   10 KFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB21_HUMAN (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 64/154 (41.56%), Postives = 98/154 (63.64%), Query Frame = 3
Query:   75 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            A    +  + K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IWDTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK DL   R V+ +EA++YA+  G     TSAK
Sbjct:   11 AAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 164          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 64/155 (41.29%), Postives = 101/155 (65.16%), Query Frame = 3
Query:   81 TGNKNINA--KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            T ++N++   K++L+GD   GK+ +V  F  G + E Q++TIG  F  ++L ++   VK ++WDTAGQER+ ++   YYR A AAII YD+T +++FE    W+ E++  G  N+V+ L GNK+DL + R V  E+A   A+++GL   +ETSAK
Sbjct:    9 TSDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAK 163          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 61/146 (41.78%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GK+ L++RF +  F     STIG  F  +T+ +    +K ++WDTAGQER+ ++   YYRGA   I+VYDIT++ SFE  + W++ ++   +  +   L GNK D+   RKV  E+A   A+E+G+ F ETSAK++
Sbjct:   10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.416e-29
Identity = 61/146 (41.78%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GK+ L++RF +  F     STIG  F  +T+ +    +K ++WDTAGQER+ ++   YYRGA   I+VYDIT++ SFE  + W++ ++   +  +   L GNK D+   RKV  E+A   A+E+G+ F ETSAK++
Sbjct:   10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQENGLFFMETSAKT 539
            KL+L+GD G GKS L+LRF  G F     +TIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+++SF   + W++ ++   + N+   L GNKAD+ ++ R V   + QA A E G+ F ETSAKT
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKT 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T
Sbjct:   10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALT 154          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB19_XENLA1.084e-2944.14Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RAB13_MESAU1.084e-2941.78Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB4A_ECHMU1.416e-2943.84Probable Ras-related protein Rab-4A OS=Echinococcu... [more]
RAB4A_DANRE1.416e-2944.14Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB21_HUMAN1.416e-2941.56Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2... [more]
RAB19_MOUSE1.416e-2941.29Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB13_HUMAN1.416e-2941.78Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN1.416e-2941.78Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RB1BV_BETVU1.850e-2943.15Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB4A_BOVIN1.850e-2944.14Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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