CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 61/145 (42.07%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KL+L+GD G GKS L+LRF +  F     +TIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   +++YD+T++ SF+  + W   ++   + N+   L GNK D  D R+V+ E+ QA A E G+ F+E SAKT
Sbjct:   11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKT 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 60/147 (40.82%), Postives = 95/147 (64.63%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GK+ L+ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYDITN+ SF+  K W++ ++   + ++   + GNK D+ D R+V+ E  +  A + G+ F+ETSAK++T
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSST 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 60/147 (40.82%), Postives = 95/147 (64.63%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GK+ L+ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYDITN+ SF+  K W++ ++   + ++   + GNK D+ D R+V+ E  +  A + G+ F+ETSAK++T
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSST 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 60/147 (40.82%), Postives = 95/147 (64.63%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+GD G GK+ L+ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYDITN+ SF+  K W++ ++   + ++   + GNK D+ D R+V+ E  +  A + G+ F+ETSAK++T
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSST 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.155e-29
Identity = 65/157 (41.40%), Postives = 101/157 (64.33%), Query Frame = 3
Query:   75 ATTGNKNINA--KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            A T ++N++   K++L+GD   GK+ +V  F  G + E Q++TIG  F  ++L ++   VK ++WDTAGQER+ ++   YYR A AAII YD+T +++FE    W+ E++  G  N+V+ L GNK+DL + R V  E+A   A++ GL   +ETSAK
Sbjct:    7 ARTVDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAK 163          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 65/147 (44.22%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KL+L+G+ G GKS L+LRF    +     STIG  F  +T+ ++  TVK +IWDTAGQER+ ++   YYRG+   IIVYD+T+Q SF   K W+QE+       ++  L GNK DL D R V  + A+ +A  N + F+ETSA  +T
Sbjct:   10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDST 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB6C_HUMAN (Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 62/151 (41.06%), Postives = 93/151 (61.59%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            GN     KLV LG+    K+SL+ RF    F    ++ IG  F S+T+ + D T+   +WDTAGQER  SL P Y R +AAA++VYDITN  SF++  KW+ +++ +   ++++ L GN+ DL D R+V+ EE +  A+   + F+ET AK
Sbjct:    8 GNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAK 158          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 62/145 (42.76%), Postives = 93/145 (64.14%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            K++L+GD   GK+ +V  F  G ++E Q++TIG  F  + L ++   VK ++WDTAGQER+ ++   YYR A AAII YD+T +++FE    W+ E++  G  N+V+ L GNK DL + R V  E+A   A++ GL   +ETSAK
Sbjct:   19 KIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAK 163          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.381e-29
Identity = 63/144 (43.75%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++L+GD G GKS L++RFV+ +F     +TIG  F  +T+ +N   VK ++WDTAGQER+ ++   YYRGA   I+VYD+T++ +F   K+W + +    N    + L GNK+D +D R VT E+ +A A+E GL F+E+SAK
Sbjct:   22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSD-MDTRVVTYEQGEALAKELGLPFIESSAK 164          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.381e-29
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+L+GD G GK+  + RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYDITN+ SFE  + WV+ ++   +P++   + GNK D  D R+V+ E+ +  A   G+ FMETSAK
Sbjct:   10 KLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAK 153          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT2_SCHPO3.155e-2942.07GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8B_RAT3.155e-2940.82Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB3.155e-2940.82Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE3.155e-2940.82Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB19_RAT3.155e-2941.40Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
YPT1_YEAST4.120e-2944.22GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB6C_HUMAN4.120e-2941.06Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6... [more]
RAB19_BOVIN4.120e-2942.76Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
SEC4_CANGA5.381e-2943.75Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB8A_CHICK5.381e-2942.36Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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