CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT5_SCHPO (GTP-binding protein ypt5 OS=Schizosaccharomyces pombe GN=ypt5 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.845e-46
Identity = 101/161 (62.73%), Postives = 118/161 (73.29%), Query Frame = 3
Query:   75 ATTGNKN---INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARK-VTAEEAQAYAQENGLFFMETSAKTA 542
            + T  KN   IN KLVLLGD   GKSSLVLRFVK QF +++ESTIGAAF +QTL +++ T VK EIWDTAGQERY SLAPMYYR A  AI+VYDIT  AS E+AK W++ELQ Q    +V+ALAGNK DL   R+ V   +A+AYA E  L F ETSAKTA
Sbjct:    3 SNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTA 163          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.117e-42
Identity = 86/148 (58.11%), Postives = 108/148 (72.97%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD---ARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLVLLG+   GKSS+VLRFV   F E +E TIGAAF +Q + +N+ TVKFEIWDTAGQER+ SLAPMYYR A AA++VYD+T   SF +A+ WV+EL  Q + ++++AL GNK D+L     RKV  EE +  A+E GL F ETSAKT
Sbjct:    9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 6.129e-41
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGALVVETSAKNA 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.129e-41
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.045e-40
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+HSLAPMYYRG+AAA+IVYDIT Q SF   KKWV+EL+  G  N+VMA+AGNK DL D R+V  ++A+ YA+  G   +ETSAK A
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 7.492e-39
Identity = 80/146 (54.79%), Postives = 103/146 (70.55%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+ +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G PN+V+A+AGNK DL+D R+V   +A+ YA      F+ETSAK A
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNA 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.847e-38
Identity = 88/174 (50.57%), Postives = 110/174 (63.22%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN--------DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-GNPNMVMALAGNKADLLD--------------------ARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLVLLGD   GKSS+V RFVK  F E +ESTIGAAF SQ++ ++        D  +KFEIWDTAGQERY SLAPMYYR A AA++VYDIT + S ++A+ WV EL+ + G+ ++V+ L GNK DL                       R ++ EEA+ YAQE GL F E SAKT
Sbjct:    5 KLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKT 178          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB22A_CANFA (Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.718e-38
Identity = 79/146 (54.11%), Postives = 102/146 (69.86%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQE + +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G PN+V+A+AGNK DL+D R+V   +A+ YA      F+ETSAK A
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNA 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 6.342e-38
Identity = 79/146 (54.11%), Postives = 102/146 (69.86%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+ LLGD G GKSS+V RFV+  F      TIGA+F ++T+   +   KF IWDTAGQER+ +LAPMYYRG+AAAIIVYDIT + +F   K WV+EL+  G P++V+A+AGNK DL D R+V   +A+ YA      F+ETSAK A
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNA 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.111e-37
Identity = 73/147 (49.66%), Postives = 104/147 (70.75%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K VL+GD G GKS+L++RF + +F    +STIG  F ++ + +++  +K +IWDTAGQERY ++   YYRGA  A+IVYDIT Q+SF+   +W++EL+   + N+V+ L GNK DLL  R V+ EEAQA+A EN L F+ETSA  A+
Sbjct:   12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDAS 158          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT5_SCHPO4.845e-4662.73GTP-binding protein ypt5 OS=Schizosaccharomyces po... [more]
VPS21_YEAST1.117e-4258.11Vacuolar protein sorting-associated protein 21 OS=... [more]
RAB31_RAT6.129e-4157.53Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE6.129e-4157.53Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB31_HUMAN1.045e-4057.53Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
RB22A_HUMAN7.492e-3954.79Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
YPT52_YEAST2.847e-3850.57GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
RB22A_CANFA3.718e-3854.11Ras-related protein Rab-22A OS=Canis familiaris GN... [more]
RB22A_MOUSE6.342e-3854.11Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
YPT3_SCHPO4.111e-3749.66GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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