CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 63/146 (43.15%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++L+GD G GK+ L++RF  G F+     ST+G  F ++ L V+   VK ++WDTAGQER+ S+   YYR A A +++YD+TN+ASF+  + W+ E+      ++ + L GNK D    R V  E+ +  A+E GL FMETSAKT
Sbjct:   65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKT 210          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.950e-28
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+L+GD G GK+ ++ RF    F     STIG     +T+ +    +K +IWDTAGQER+H++   YYRGA   ++VYDITN  SFE   KW++ +    N ++   L GNK D+ D R V   + +  A+E+G+ F ETSAK
Sbjct:   11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAK 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.015e-27
Identity = 57/146 (39.04%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GKS L+LRF  G F     +TIG  F  +T+ +    +K +IWDTAGQER+ ++   YYRGA   ++VYD+T++ SF   + W++ ++   + ++   L GNK D+ + + V +   ++ A E G+ F+ETSAK +
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNS 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 64/148 (43.24%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTAT 545
            KLVL+GD   GK+ +V RF  G F   Q STIG  F  +TL +    VK +IWDTAGQER+ ++   YYR A  AI+ YDI+ +++F     W+++++     N+V  L GNK+DL D R+V   EAQ+ A+  + L  +ETSAK ++
Sbjct:   18 KLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSS 165          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.731e-27
Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GK+ L+ RF +  F     STIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   + VYDITN+ SF+  K W++ ++   + ++   + GNK D+ + R+V+ E  +  A + G+ F+ETSAK++
Sbjct:   10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSS 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.731e-27
Identity = 64/148 (43.24%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKTAT 545
            KLVL+GD   GK+ +V RF  G F   Q STIG  F  +TL +    VK +IWDTAGQER+ ++   YYR A  AI+ YDI+ +++F     W+++++     N+V  L GNK+DL D R+V   EAQ+ A+  + L  +ETSAK ++
Sbjct:   18 KLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSS 165          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.261e-27
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQA-QGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF +  F   Q +TIG  F  +TL V     K  IWDTAGQER+ +L P YYRGA   I+VYD++++ SF +   W+ EL+      +MV  L GNK D  +  +VT +E   +A+++ + F+E SAKT
Sbjct:   11 KILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKLDAWLNELETFSTKHDMVKMLVGNKIDRAN-HEVTKDEGLKFARKHHMLFIEASAKT 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB24_HUMAN (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.261e-27
Identity = 68/155 (43.87%), Postives = 100/155 (64.52%), Query Frame = 3
Query:   90 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD----ARKVTAEEAQAYAQENGLFFMETSAKT 539
            + ++ K+V+LG    GK+SLV R+V  +F+    ++TIGAAF ++ ++V D TV   IWDTAG ERY +++ +YYRGA AAI+ YD+T+ +SFERAK WV+EL++       + L G K+DLL+     R+V   + Q YA        ETS+KT
Sbjct:    4 QRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSL-EEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKT 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 68/155 (43.87%), Postives = 99/155 (63.87%), Query Frame = 3
Query:   90 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLD----ARKVTAEEAQAYAQENGLFFMETSAKT 539
            + ++ K+V+LG    GK+SLV R+V  +F+    ++TIGAAF ++ + V D TV   IWDTAG ERY +++ +YYRGA AAI+ YD+T+ +SFERAK WV+EL++       + L G K+DLL+     R+V   + Q YA        ETS+KT
Sbjct:    4 QRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSL-EEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKT 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB21_DICDI (Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+VLLG+   GK+S+V R++   F +    T  A FF + + +    +   IWDTAGQER+H+L P+YYRG+  A++VYDIT+  SF +AK W++EL+     ++ + + GNK DL   R +   +A+AYA+  G     TSAK
Sbjct:    9 KVVLLGEGCVGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTAGQERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLEKTRVIPLADAEAYAKSVGAIHYSTSAK 152          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB26_HUMAN5.950e-2843.15Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB10_CHICK5.950e-2842.36Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB8B_DICDI1.015e-2739.04Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB43_RAT1.325e-2743.24Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB8_DISOM1.731e-2739.73Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB43_MOUSE1.731e-2743.24Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RB18A_LYMST2.261e-2743.15Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAB24_HUMAN2.261e-2743.87Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
RAB24_MOUSE2.953e-2743.87Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
RAB21_DICDI2.953e-2740.97Ras-related protein Rab-21 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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