CX293826
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27 Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542 KL+L+GD G GKS L+LRF + F +TIG F +T+ + +K +IWDTAGQER+ ++ YYRGA ++VYD+T++ SF + W++ ++ ++ L GNK D+ + + V + ++ A E G+ F+ETSAK + Sbjct: 17 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNS 162
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFM-ETSAKTAT 545 K+VL G G GKS L+ RFVK Q+ + T+G F S+ ++V +K +IWDTAGQE++ S+A YYRGAA A++VYD+TN+ SFE W+ +++A + + LAG+K+DL + R+V+ EEA + E + ETS+ T + Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGS 162
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542 +L+++GD GKS L+ RF +G+F + + T+G FFS+ + + +K +IWDTAGQER+ S+ YYR + ++++DITN+ SF+ +W++E + P +V L G+K DL R+VT EA+ A G+ ++ETSA+ A Sbjct: 10 RLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDA 157
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542 +L+++GD GKS L+ RF +G+F + + T+G FFS+ + + +K +IWDTAGQER+ S+ YYR + ++++DITN+ SF+ +W++E + P +V L G+K DL R+VT EA+ A G+ ++ETSA+ A Sbjct: 10 RLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDA 157
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542 +L+++GD GKS L+ RF +G+F + + T+G FFS+ + + +K +IWDTAGQER+ S+ YYR + ++++DITN+ SF+ +W++E + P +V L G+K DL R+VT EA+ A G+ ++ETSA+ A Sbjct: 10 RLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDA 157
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39A_HUMAN (Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39 PE=2 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545 +L+++GD GKS L+ RF +G+F + + T+G FFS+ L + +K ++WDTAGQER+ S+ YYR + +V+DITN+ SFE K W++E + P +V L G+K DL R+VT EEA+ + + G+ ++ETSAK AT Sbjct: 10 RLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDAT 162
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539 K++++G+ G GKSSL+LRF F +TIG F +T+A++ K IWDTAGQER+ +L P YYRGA I+VYD+T + +F + + W+ EL+ N +V L GNK D D R+V E +A+++ + F+E SAKT Sbjct: 10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKID-KDNREVDRNEGLKFARKHSMLFIEASAKT 154
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27 Identity = 58/150 (38.67%), Postives = 98/150 (65.33%), Query Frame = 3 Query: 96 INAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQENGLFFMETSAKT 539 +N K +LLGD G GK+S ++++ G+F + +T+G A ++ + V+ VK +IWDTAGQER+ S+ YYR A A +++YD+TN+ +++ + W+ E++ ++V+ L GNKAD + R+V E+ + +E+ + FMETSAKT Sbjct: 189 VNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKT 338
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27 Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536 KL+++G+ GK+S + R+ F ST+G F +T+ N+ +K +IWDTAGQERY ++ YYRGA I++YDITN+ SF + W +++ N + LAGNK D+ D R V+ E Q ++ G F ETSAK Sbjct: 32 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAK 175
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27 Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 3 Query: 105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536 KL+++G+ GK+S + R+ F ST+G F +T+ N+ +K +IWDTAGQERY ++ YYRGA I++YDITN+ SF + W +++ N + LAGNK D+ D R V+ E Q ++ G F ETSAK Sbjct: 32 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAK 175 The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bpback to top |