CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27
Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            KL+L+GD G GKS L+LRF +  F     +TIG  F  +T+ +    +K +IWDTAGQER+ ++   YYRGA   ++VYD+T++ SF   + W++ ++     ++   L GNK D+ + + V +   ++ A E G+ F+ETSAK +
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNS 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFM-ETSAKTAT 545
            K+VL G  G GKS L+ RFVK Q+ +    T+G  F S+ ++V        +K +IWDTAGQE++ S+A  YYRGAA A++VYD+TN+ SFE    W+ +++A     + + LAG+K+DL + R+V+ EEA  +  E  +    ETS+ T +
Sbjct:   11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGS 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            +L+++GD   GKS L+ RF +G+F +  + T+G  FFS+ + +     +K +IWDTAGQER+ S+   YYR +   ++++DITN+ SF+   +W++E +    P  +V  L G+K DL   R+VT  EA+  A   G+ ++ETSA+ A
Sbjct:   10 RLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDA 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            +L+++GD   GKS L+ RF +G+F +  + T+G  FFS+ + +     +K +IWDTAGQER+ S+   YYR +   ++++DITN+ SF+   +W++E +    P  +V  L G+K DL   R+VT  EA+  A   G+ ++ETSA+ A
Sbjct:   10 RLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDA 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 57/148 (38.51%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            +L+++GD   GKS L+ RF +G+F +  + T+G  FFS+ + +     +K +IWDTAGQER+ S+   YYR +   ++++DITN+ SF+   +W++E +    P  +V  L G+K DL   R+VT  EA+  A   G+ ++ETSA+ A
Sbjct:   10 RLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDA 157          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39A_HUMAN (Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            +L+++GD   GKS L+ RF +G+F   +    + T+G  FFS+ L +     +K ++WDTAGQER+ S+   YYR +    +V+DITN+ SFE  K W++E +    P  +V  L G+K DL   R+VT EEA+  + + G+ ++ETSAK AT
Sbjct:   10 RLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDAT 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 62/146 (42.47%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF    F     +TIG  F  +T+A++    K  IWDTAGQER+ +L P YYRGA   I+VYD+T + +F + + W+ EL+     N +V  L GNK D  D R+V   E   +A+++ + F+E SAKT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKID-KDNREVDRNEGLKFARKHSMLFIEASAKT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 58/150 (38.67%), Postives = 98/150 (65.33%), Query Frame = 3
Query:   96 INAKLVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQENGLFFMETSAKT 539
            +N K +LLGD G GK+S ++++  G+F +    +T+G A  ++ + V+   VK +IWDTAGQER+ S+   YYR A A +++YD+TN+ +++  + W+ E++     ++V+ L GNKAD   + R+V  E+ +   +E+ + FMETSAKT
Sbjct:  189 VNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKT 338          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++G+   GK+S + R+    F     ST+G  F  +T+  N+  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + LAGNK D+ D R V+ E  Q   ++ G  F ETSAK
Sbjct:   32 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAK 175          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++G+   GK+S + R+    F     ST+G  F  +T+  N+  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + LAGNK D+ D R V+ E  Q   ++ G  F ETSAK
Sbjct:   32 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAK 175          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_DICDI3.857e-2738.36Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
YPT4_SCHPO5.037e-2741.45GTP-binding protein ypt4 OS=Schizosaccharomyces po... [more]
RB39B_MOUSE5.037e-2738.51Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN5.037e-2738.51Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
RB39B_BOVIN5.037e-2738.51Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]
RB39A_HUMAN5.037e-2740.52Ras-related protein Rab-39A OS=Homo sapiens GN=RAB... [more]
RB18B_DANRE5.037e-2742.47Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RAB26_DROME6.578e-2738.67Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB3C_RAT8.591e-2740.28Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE8.591e-2740.28Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
back to top