CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB39A_MOUSE (Ras-related protein Rab-39A OS=Mus musculus GN=Rab39 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 61/153 (39.87%), Postives = 94/153 (61.44%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQ----ESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP-NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            +L+++GD   GKS L+ RF +G+F        + T+G  FFS+ L +     +K ++WDTAGQER+ S+   YYR +    +V+DITN+ SFE  K W++E +    P  +V  L G+K DL   R+V+ EEA+  + + G+ ++ETSAK AT
Sbjct:   10 RLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQRQVSREEAERLSTDCGMKYIETSAKDAT 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++GD G GKSSL+LRF    F     +TIG  F  +T+ +N   VK +IWDTAGQER+ ++   YYRG    I+VYD+T+  SF   K+W+ E+  Q   ++   L GNK D  + + V  E+A  +A + G+   ETSAK
Sbjct:   10 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++GD G GKSSL+LRF    F     +TIG  F  +T+ +N   VK +IWDTAGQER+ ++   YYRG    I+VYD+T+  SF   K+W+ E+  Q   ++   L GNK D  + + V  E+A  +A + G+   ETSAK
Sbjct:   10 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++GD G GKSSL+LRF    F     +TIG  F  +T+ +N   VK +IWDTAGQER+ ++   YYRG    I+VYD+T+  SF   K+W+ E+  Q   ++   L GNK D  + + V  E+A  +A + G+   ETSAK
Sbjct:   10 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            +L+L+GD G GK+ L+ RF   +F     STIG  F  +T+ V+   V+ +IWDTAGQERY ++   YYR A    +VYDI+++ S++   KWV ++       +   L GNKAD    R+V  E+ Q  A+E G+ F ETSA T
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            +L+L+GD G GK+ L+ RF   +F     STIG  F  +T+ V+   V+ +IWDTAGQERY ++   YYR A    +VYDI+++ S++   KWV ++       +   L GNKAD    R+V  E+ Q  A+E G+ F ETSA T
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            +L+L+GD G GK+ L+ RF   +F     STIG  F  +T+ V+   V+ +IWDTAGQERY ++   YYR A    +VYDI+++ S++   KWV ++       +   L GNKAD    R+V  E+ Q  A+E G+ F ETSA T
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++G+   GK+S + R+    F     ST+G  F  +T+  +D  VK +IWDTAGQERY ++   YYRGA   I++YD+TN+ SF   + WV +++     N  + L GNK D+ D R ++ E  +  A + G+ F ETSAK
Sbjct:   23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAK 166          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 59/144 (40.97%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+L+G+   GK+S + R+    F     ST+G  F  +T+  +D  +K +IWDTAGQERY ++   YYRGA   +++YDI NQ SF   + W  +++     N  + L GNK DL D R V+AE+ Q  A + G  F E SAK
Sbjct:   24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            +L+L+GD G GK+ L+ RF   +F     STIG  F  +T+ V+   V+ +IWDTAGQERY ++   YYR A    +VYDI+++ S++   KWV ++       +   L GNKAD    R+V  E+ Q  A+E G+ F ETSA T
Sbjct:   10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACT 154          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB39A_MOUSE1.465e-2639.87Ras-related protein Rab-39A OS=Mus musculus GN=Rab... [more]
RAB35_RAT1.914e-2642.36Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.914e-2642.36Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN1.914e-2642.36Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB15_RAT2.500e-2641.38Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN2.500e-2641.38Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN2.500e-2641.38Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB3_DROME3.265e-2639.58Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3D_RAT3.265e-2640.97GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB15_MOUSE3.265e-2641.38Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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