CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.264e-26
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++G+   GK+S + R+    F     ST+G  F  +T+  N+  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R ++ E  Q   ++ G  F ETSAK
Sbjct:   32 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAK 175          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 4.264e-26
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++G+   GK+S + R+    F     ST+G  F  +T+  N+  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R ++ E  Q   ++ G  F ETSAK
Sbjct:   32 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAK 175          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.273e-26
Identity = 58/145 (40.00%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KL+L+GD G GKS L+LRFV+ +F     +TIG  F  +T+      +K ++WDTAGQER+ ++   YYRGA   +++YD+T+  SFE  + W Q +    N +  + L GNK D    R+V+ E+ Q  A +  + F+E SAK+
Sbjct:   16 KLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKS 160          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.273e-26
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER+ +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + R+V   E   +A+++ + F+E SAKT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVKMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+L+G+   GK+S + R+    F     ST+G  F  +T+  +D  +K +IWDTAGQERY ++   YYRGA   +++YDI NQ SF   + W  +++     N  + L GNK DL D R V AE+ +  A + G  F E SAK
Sbjct:   24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+L+G+   GK+S + R+    F     ST+G  F  +T+  +D  +K +IWDTAGQERY ++   YYRGA   +++YDI NQ SF   + W  +++     N  + L GNK DL D R V AE+ +  A + G  F E SAK
Sbjct:   24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER+ +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + R+V   E   +A+++ + F+E SAKT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER+ +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + R+V   E   +A+++ + F+E SAKT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER+ +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + R+V   E   +A+++ + F+E SAKT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER+ +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + R+V   E   +A+++ + F+E SAKT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKT 154          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3C_HUMAN4.264e-2638.89Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN4.264e-2638.89Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
SEC4_CANAL7.273e-2640.00Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB18_CHICK7.273e-2641.78Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB3D_MOUSE9.499e-2640.28Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3D_HUMAN9.499e-2640.28Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB18_RAT9.499e-2641.78Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB9.499e-2641.78Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE9.499e-2641.78Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN9.499e-2641.78Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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