CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 61/146 (41.78%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPN-MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++++G+ G GKSSL+LRF    F     +TIG  F  +T++V+    K  IWDTAGQER+ +L P YYRGA   I+VYD+T + +F +   W+ EL+     N +V  L GNK D  + R+V   E   +A+++ + F+E SAKT
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R V++E  +  A   G  F E SAK
Sbjct:   24 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R V++E  +  A   G  F E SAK
Sbjct:   24 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R V++E  +  A   G  F E SAK
Sbjct:   24 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R V++E  +  A   G  F E SAK
Sbjct:   24 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R V++E  +  A   G  F E SAK
Sbjct:   24 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 56/144 (38.89%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++G+   GK+S + R+    F     ST+G  F  +T+  ND  +K +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ D R V++E  +  A   G  F E SAK
Sbjct:   24 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKV-TAEEAQAYAQENG-LFFMETSAKTA 542
            +  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  ++WDTAGQER+ SL   +YRGA   ++VYD+ N  SF+    W  E   Q +P    N    + GNK D+ ++++V + + A  + Q  G + + ETSAK A
Sbjct:    2 SSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEA 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTA 542
            T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK D L+ R+V  + AQA+   +N + + ETSAK A
Sbjct:    2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 62/159 (38.99%), Postives = 97/159 (61.01%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTA 542
            T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER+ SL+  +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK D L+ R+V  + AQA++  +N + + ETSAK A
Sbjct:    2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKID-LENRQVATKRAQAWSYSKNNIPYFETSAKEA 159          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB18_BOVIN9.499e-2641.78Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RAB3A_RAT1.620e-2538.89Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG1.620e-2538.89Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE1.620e-2538.89Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA1.620e-2538.89Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN1.620e-2538.89Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN1.620e-2538.89Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB7_NEUCR2.116e-2536.88Probable Ras-related protein Rab7 OS=Neurospora cr... [more]
RAB7A_RAT2.116e-2538.99Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_RABIT2.116e-2538.99Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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