CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTA 542
            T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK D L+ R+V  + AQA+   +N + + ETSAK A
Sbjct:    2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTA 542
            T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK D L+ R+V  + AQA+   +N + + ETSAK A
Sbjct:    2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTA 542
            T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK D L+ R+V  + AQA+   +N + + ETSAK A
Sbjct:    2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTA 542
            T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK D L+ R+V  + AQA+   +N + + ETSAK A
Sbjct:    2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 62/159 (38.99%), Postives = 95/159 (59.75%), Query Frame = 3
Query:   81 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYA-QENGLFFMETSAKTA 542
            T  K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ + V+D  V  +IWDTAGQER+ SL   +YRGA   ++V+D+T   +F+    W  E   Q +P    N    + GNK D L+ R+V  + AQA+   +N + + ETSAK A
Sbjct:    2 TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.764e-25
Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSAKTA 542
            MAT   K +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ L V+D  V  +IWDTAGQER+ SL   +YRGA   ++ YD+    +FE    W  E   Q  P    N    + GNK DL + R V+ + A ++ Q  G + + ETSAK A
Sbjct:    1 MAT--KKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEA 160          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25
Identity = 57/144 (39.58%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KL+++G+   GK+S + R+    F     ST+G  F  +T+   D  VK +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+   R V+ +  +  A + GL F ETSAK
Sbjct:   24 KLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25
Identity = 58/154 (37.66%), Postives = 88/154 (57.14%), Query Frame = 3
Query:   75 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            A+  N +   KL+++G+   GK+S + R+    F     ST+G  F  +T+  ++  VK +IWDTAGQERY ++   YYRGA   I++YDITN+ SF   + W  +++     N  + L GNK D+ + R V  E+ Q  A++ G  F E SAK
Sbjct:   14 ASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK 167          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25
Identity = 58/152 (38.16%), Postives = 94/152 (61.84%), Query Frame = 3
Query:   90 KNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP---NMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K ++ KL+++G +G GK+SL+ ++V   F E  ++T+GA+  S+ + + D T+K +IWDT GQER+ S+   +Y+G+   I+ +D+T+  SFE    W  ++ A+  P   +  M L GNK DL D RKV  E AQ + +E  + + E SAK
Sbjct:    5 KKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLAD-RKVPQEVAQGWCREKDIPYFEVSAK 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24
Identity = 53/145 (36.55%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++L+GD   GK+SL+LRF    F E   +     + ++ + ++  T   +IWDTAGQER+ ++   +YRGA   ++ YD+T+Q ++   + W+QE+Q      +   L GNK DL D + V    A+ YA   G+ FME SA T
Sbjct:    8 KILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAAT 152          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7A_PONAB2.116e-2538.99Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE2.116e-2538.99Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN2.116e-2538.99Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]
RAB7A_CANFA2.116e-2538.99Ras-related protein Rab-7a OS=Canis familiaris GN=... [more]
RAB7A_BOVIN2.116e-2538.99Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ... [more]
RAB7A_DICDI2.764e-2539.51Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]
RAB3_CAEEL3.610e-2539.58Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3B_HUMAN3.610e-2537.66Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB7B_HUMAN4.714e-2538.16Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RABG2_DICDI1.050e-2436.55Ras-related protein RabG2 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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