CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.196e-36
Identity = 74/147 (50.34%), Postives = 100/147 (68.03%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++T  V    VK +IWDTAGQERY ++   YYRGA  A+++YD+T  A+FE A +W++EL+   +PN+V+ L GNK DL     V  EEA+A+A+   L+FMETSA  AT
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDAT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.480e-36
Identity = 71/147 (48.30%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K+VL+GD   GKS ++ RF + +F    ++TIG  F ++TLA+   +VK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+   +W++EL+A  + N+V+ L GNK DL D R V  E+A+ +AQ+ GLFF+ETSA  AT
Sbjct:   17 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEAT 163          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.545e-36
Identity = 73/147 (49.66%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            KLVL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE A +W++EL+   +PN+V+ L GNK+DL     V  E+ +++A+   L+FMETSA  AT
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEAT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.936e-36
Identity = 72/146 (49.32%), Postives = 100/146 (68.49%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++VYD+T   +FE   +W++EL+   + N+V+ L GNK DL   R V  E+AQ+YA++ GL F+ETSA  A
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.753e-36
Identity = 70/147 (47.62%), Postives = 104/147 (70.75%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K+VL+GD G GKS+L+ RF K +F    +STIG  F +++L V+D  +K +IWDTAGQERY ++   YYRGA  A++VYD+T  ++FE  + W++EL+   +PN+V+ L GNK+DL     V  E+A+++A++  L+FMETSA  AT
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEAT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.753e-36
Identity = 72/147 (48.98%), Postives = 102/147 (69.39%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K+VL+GD G GKS+L+ RF K +F    +STIG  F ++TL V+   VK +IWDTAGQERY ++   YYRGA  A++VYD+T +A+FE   +W++EL+   +PN+V+ L GNK+DL     V  E+ ++YA++  L FMETSA  AT
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEAT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.013e-35
Identity = 71/143 (49.65%), Postives = 101/143 (70.63%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 533
            KLVL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+D  VK +IWDTAGQERY ++   YYRGA  A++VYDIT   +FE  ++W++EL+   + N+V+ L GNKADL   R V+ E+A+A+A+    FFMETSA
Sbjct:   16 KLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSA 158          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB5B_DICDI (Putative ras-related protein Rab-5B OS=Dictyostelium discoideum GN=rab5B PE=5 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.013e-35
Identity = 77/144 (53.47%), Postives = 102/144 (70.83%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENG-LFFMETSA 533
            KLVLLG++  GK+ +  R V+ +F    +STIGAAF  +++ V++  +K EIWDTAGQERY SL PMYYRGAAAA++VYDIT + +FE  K+WV ELQ   +PN+++ALAGNK DL + R+V  +E   Y  E G   F ETSA
Sbjct:   51 KLVLLGEMNTGKTCISSRLVRNEFGP-TDSTIGAAFLVKSMVVDNINIKLEIWDTAGQERYRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDLPN-REVQVDEVNRYISELGNAIFFETSA 192          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.727e-35
Identity = 70/146 (47.95%), Postives = 103/146 (70.55%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            K+VL+GD G GKS+++ RF + +F    +STIG  F ++TL V   TVK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+  ++W++EL+   + N+V+ +AGNK+DL   R V+ E+ QA A++ GL F+ETSA  A
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEA 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.727e-35
Identity = 69/147 (46.94%), Postives = 102/147 (69.39%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K+VL+GD   GK+ ++ RF + +F    ++TIG  F ++TL +   +VK +IWDTAGQERY ++   YYRGA  A++VYDIT + +F+   +W++EL+A  + N+V+ L GNK DL D R V  E+A+ +AQ+ GLFF+ETSA  AT
Sbjct:   17 KVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEAT 163          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA1A_ARATH1.196e-3650.34Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11D_TOBAC3.480e-3648.30Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11D_LOTJA4.545e-3649.66Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA2A_ARATH5.936e-3649.32Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAA1C_ARATH7.753e-3647.62Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RAA1B_ARATH7.753e-3648.98Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11B_TOBAC1.013e-3549.65Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAB5B_DICDI1.013e-3553.47Putative ras-related protein Rab-5B OS=Dictyosteli... [more]
RB2BV_BETVU1.727e-3547.95Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_TOBAC1.727e-3546.94Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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