CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB33B_HUMAN (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K ++WDTAGQER+  S+   YYR   A + VYD+TN ASF     W++E +     N +   L GNK DL  A +V  + AQ +A  + +   ETSAK
Sbjct:   35 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 180          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB33B_CHICK (Ras-related protein Rab-33B OS=Gallus gallus GN=RAB33B PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K ++WDTAGQER+  S+   YYR   A + VYD+TN ASF     W++E +     N +   L GNK DL +A +V  + AQ +A  + +   ETSAK
Sbjct:   33 KIIVIGDSNVGKTCLTYRFCAGRFPQRTEATIGVDFRERAVTIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNLASFHSLPSWIEECKQHLLTNDIPRILVGNKCDLRNAIQVPTDLAQKFADTHSMPLFETSAK 178          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 61/151 (40.40%), Postives = 88/151 (58.28%), Query Frame = 3
Query:   96 INAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLL---DARKVTAEEAQAYAQENGLFFMETSAKT 539
            I+ K+VLLG    GK+ +V R+  GQF +   +TIG AF S+ + V +  V   IWDTAG ERY ++   YYR A AAI+ YD+TN+ S+E+   W +EL  Q  P + + + G K DL+   D + V  EE +  A+       ETS++T
Sbjct:    6 IDLKVVLLGYASVGKTCIVTRYTSGQFGD-THTTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEEL-TQNEPEIEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.412e-23
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGN-PNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++L+GD   GK+S+V RF    F E    TIG  F  + + V+   V   IWDTAGQE++ +L   YYRGA   I+ YD+T + SF+    W+ E++   N  N+V  L GNK D  + R+VT EE   +A++  + F+E SAK+
Sbjct:    8 KVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKID-KENREVTREEGAEFAKKKAMLFIECSAKS 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.763e-23
Identity = 58/149 (38.93%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE----LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K ++WDTAGQER+  S+   YYR   A + VYD+TN ASF     W++E    L A   P +   L GNK DL  A +V  + AQ +A  + +   ETSAK
Sbjct:   35 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLASDIPRI---LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 180          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.763e-23
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-SLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K++++GD   GK+ L  RF  G+F +  E+TIG  F  + + ++   +K ++WDTAGQER+  S+   YYR   A + VYD+TN ASF     W++E +     N +   L GNK DL  A +V  + AQ +A  + +   ETSAK
Sbjct:   35 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 180          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASEF_CAEEL (RAS and EF-hand domain-containing protein homolog OS=Caenorhabditis elegans GN=tag-312 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR--KVTAEEAQAYAQENGLFFMETSA 533
            ++V+ GD   GKSS V+R ++ QF     ST+G  F  +T+ V+   V  ++WDTAGQER+ SL   Y+R A  AI+VYD+  + SF R + W++ ++     ++ + L GNK D+  +    V   +  + A   G+ FMETSA
Sbjct:  463 RIVMCGDAAVGKSSFVMRVIRRQFTNQLPSTLGVDFHVKTVNVDGRNVALQLWDTAGQERFRSLCKSYFRRADGAILVYDVCAEQSFLRVRDWIETIKESTERSIPIILVGNKVDMRISTPGSVAKTDGASMAAAMGVLFMETSA 607          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB9A_RAT (Ras-related protein Rab-9A OS=Rattus norvegicus GN=Rab9a PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 58/152 (38.16%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTAT 545
            K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER+ SL   +YRG+   ++ + + +  SF+    W +E       +   +    + GNK D+ + R+V+ EEAQA+ ++NG + + ETSAK +T
Sbjct:    9 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDST 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 58/152 (38.16%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTAT 545
            K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER+ SL   +YRG+   ++ + + +  SF+    W +E       +   +    + GNK D+ + R+V+ EEAQA+ ++NG + + ETSAK +T
Sbjct:    9 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDST 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL----QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAKTAT 545
            K++LLGD G GKSSL+ R+V  +F      TIG  F ++ L V+   V  +IWDTAGQER+ SL   +YRG+   ++ + + +  SF+    W +E       +   +    + GNK D+ + R+V+ EEAQA+ ++NG + + ETSAK AT
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDAT 159          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB33B_HUMAN3.378e-2338.36Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
RB33B_CHICK3.378e-2338.36Ras-related protein Rab-33B OS=Gallus gallus GN=RA... [more]
RAB24_DICDI3.378e-2340.40Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RAB18_DICDI4.412e-2340.41Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RB33B_PONAB5.763e-2338.93Ras-related protein Rab-33B OS=Pongo abelii GN=RAB... [more]
RB33B_MOUSE5.763e-2338.36Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RASEF_CAEEL7.526e-2337.24RAS and EF-hand domain-containing protein homolog ... [more]
RAB9A_RAT7.526e-2338.16Ras-related protein Rab-9A OS=Rattus norvegicus GN... [more]
RAB9A_MOUSE7.526e-2338.16Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB9A_HUMAN7.526e-2338.82Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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