CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K VL GD G GK+S++ R     F E    TIG  F  +T+ +    +K +IWDTAG++R+  +   +YRG    IIVYD+T+Q SFE    W+++++   N N++  + GNK DL+  + V    AQ +A    + F E SAK
Sbjct:   10 KFVLAGDSGVGKTSILFRITDDTFTE-THITIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAK 151          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASEF_MOUSE (RAS and EF-hand domain-containing protein homolog OS=Mus musculus GN=Rasef PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 55/150 (36.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA------RKVTAEEAQAYAQENGLFFMETSAK 536
            K+VL GD   GKSS ++R  K +F     +T+G  F  +TL V+      ++WDTAGQER+ S+A  Y+R A   +++YD+T + SF   ++WV  ++   +  + + L GNKADL D       + ++A   +  A   G  F ETSAK
Sbjct:  430 KIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLIVDGEQTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNVREWVDMVEDGTHRTIPIMLVGNKADLRDVDNAENQKCISAYLGEKLAMTYGALFCETSAK 579          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB27A_RAT (Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 59/167 (35.33%), Postives = 94/167 (56.29%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVN----DATV------KFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            G+ +   K + LGD G GK+S++ ++  G+F     +T+G  F  + +       D TV        ++WDTAGQER+ SL   ++R A   ++++D+TN+ SF   + W+ +LQ      NP++V  L GNK+DL D R V  EEA+  A++ G+ + ETSA   T
Sbjct:    4 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGT 168          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 55/151 (36.42%), Postives = 91/151 (60.26%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNP----NMVMALAGNKADL--LDARKVTAEEAQAY-AQENGLFFMETSAK 536
            K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +  +D     +IWDTAGQER+ SL   +YRGA   ++V+D+    SF+    W +E   Q +P    N    + GNK D+   ++R V+ ++A+A+ A +  + + ETSAK
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB27B_HUMAN (Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21
Identity = 59/167 (35.33%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   78 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  N             V  ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA     NP++V  L GNKADL D R+V   +A+  A + G+ + ETSA T
Sbjct:    2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 166          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB27B_BOVIN (Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.419e-21
Identity = 59/167 (35.33%), Postives = 94/167 (56.29%), Query Frame = 3
Query:   78 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +A N             V  ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA     NP++V  L GNKADL D R+V   +A+  A++  + + ETSA T
Sbjct:    2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVAYNTQGPNGPTGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARDLAEKYSIPYFETSAAT 166          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB44_MOUSE (Ras-related protein Rab-44 OS=Mus musculus GN=Rab44 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21
Identity = 55/142 (38.73%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  108 LVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 533
            +V LGD   GK+S +       F     +T+G  F  + L V++ T   ++WDTAGQERYHSL     R A   +++YD+T+Q SF   + W+  LQ  G   + M L GNK D  + R+V  E  +  AQE G+ F E SA
Sbjct:  540 VVFLGDSNVGKTSFLHLLHHDAFATGLTATVGVDFRVKNLLVDNKTFALQLWDTAGQERYHSLTRQLLRKAEGVVLMYDVTSQESFTHVRYWLDCLQDAGVEGVAMVLLGNKMDCEEERQVPTEAGRRLAQELGVSFGECSA 681          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 58/167 (34.73%), Postives = 94/167 (56.29%), Query Frame = 3
Query:   78 TTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            T G+ +   KL+ LGD G GK++ + R+   +F     +T+G  F  + +  +             V  ++WDTAGQER+ SL   ++R A   ++++D+T+Q SF   + W+ +LQA     NP++V  L GNKADL D R+V   +A+  A++ G+ + ETSA T
Sbjct:    2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAAT 166          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB27A_HUMAN (Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDA----------TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQG---NPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            G+ +   K + LGD G GK+S++ ++  G+F     +T+G  F  + +    +           +  ++WDTAGQER+ SL   ++R A   ++++D+TN+ SF   + W+ +LQ      NP++V  L GNK+DL D R V  EEA A A++ G+ + ETSA   T
Sbjct:    4 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV--LCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGT 168          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB44_HUMAN (Ras-related protein Rab-44 OS=Homo sapiens GN=RAB44 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 3
Query:   69 PMATTG---NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSA 533
            PMA  G   N +    ++ LGD   GK+S +    +  F     +T+G  F  +TL V++     ++WDTAGQE YHS+     R A   +++YDIT+Q SF   + W+  LQ  G+  +V+ L GNK D  + R+V+ E  Q  AQE G++F E SA
Sbjct:  522 PMAGGGPQANPDYLFHVIFLGDSNVGKTSFLHLLHQNSFATGLTATVGVDFRVKTLLVDNKCFVLQLWDTAGQE-YHSMTRQLLRKADGVVLMYDITSQESFAHVRYWLDCLQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQELGVYFGECSA 678          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABF1_DICDI3.735e-2238.19Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RASEF_MOUSE8.322e-2236.67RAS and EF-hand domain-containing protein homolog ... [more]
RB27A_RAT1.087e-2135.33Ras-related protein Rab-27A OS=Rattus norvegicus G... [more]
RAB7_GOSHI1.087e-2136.42Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RB27B_HUMAN1.419e-2135.33Ras-related protein Rab-27B OS=Homo sapiens GN=RAB... [more]
RB27B_BOVIN1.419e-2135.33Ras-related protein Rab-27B OS=Bos taurus GN=RAB27... [more]
RAB44_MOUSE1.854e-2138.73Ras-related protein Rab-44 OS=Mus musculus GN=Rab4... [more]
RB27B_MOUSE2.421e-2134.73Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]
RB27A_HUMAN2.421e-2134.13Ras-related protein Rab-27A OS=Homo sapiens GN=RAB... [more]
RAB44_HUMAN2.421e-2137.34Ras-related protein Rab-44 OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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