CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAS2_PHYPO (Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 53/145 (36.55%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KLV++G  G GKS+L ++ ++  FI+  + TI  ++  Q + +++ T   +I DTAGQE Y ++   Y R     ++VY IT+++SF+    + ++ L+ +    + M LAGNK DL   R+VT  E Q  A+  G  F+ETSAK
Sbjct:    7 KLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYRKQVV-IDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFVMVYSITSRSSFDEINAFREQILRVKDKDTVPMVLAGNKCDLASERQVTTNEGQELARAFGCPFVETSAK 150          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 50/145 (34.48%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+V++G  G GKS+L ++F++  F++  + TI  ++  Q + ++D T   ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q++ + +   +  M L GNK DL   R+V+++E +  A+  G  F ETSAK
Sbjct:   11 KIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAK 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAL_DISOM (Ras-related protein O-RAL OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 58/162 (35.80%), Postives = 99/162 (61.11%), Query Frame = 3
Query:   72 MATTGNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA   NKN ++    K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     + V+ IT Q SF    ++ ++ L+ +   + + + L GNK+DL D R+V+ EEA++ A+E G+ ++ETSAKT
Sbjct:    1 MAANKNKNQSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEQESFTATVEFREQILRVKAEEDKIPLLLVGNKSDLEDRRQVSIEEARSKAEEWGVQYVETSAKT 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABZ_DICDI (Ras-related protein RabZ OS=Dictyostelium discoideum GN=rabZ PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 47/144 (32.64%), Postives = 82/144 (56.94%), Query Frame = 3
Query:  108 LVLLGDVGAGKSSLVLRFVKGQF-IEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            ++L+GD   GKSS++ RF   QF +  + S I    F++ + +    +  + +DTAGQE++ +L+  YYR A   ++ YDI NQ +F+   +W++E+     PN+ + +  NK DL + R V    A+ +A +  +  +E SAK
Sbjct:   53 IILIGDQATGKSSVLQRFKNNQFEVCHKPSPIIIDCFTKKIQIEGKKISLKCYDTAGQEKFRALSQSYYRCADGIMLFYDIANQKTFDNVGRWLEEVHRLAGPNVPILIIANKCDLNEKRVVNFNNAKKFADDKNIPIIEVSAK 196          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQ------------------AQGNPN--MVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            GNK +  KLV+LGD G GK++L ++     F+E  + TI  ++  Q +    A +  E+ DTAGQE Y +L   + R     ++VY I++++SF R KK+  ++Q                  A  NP+  + + L GNK+D +  R+V+ +E  A A+E G  F E SAKT T
Sbjct:    3 GNKQVLYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSYRKQVVIDGQACM-LEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEASAKTRT 175          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB34_PIG (Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 50/131 (38.17%), Postives = 78/131 (59.54%), Query Frame = 3
Query:   63 EHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADL 452
            EH   T G K   +K++++GD+  GK+ L+ RF K  F +  ++TIG  F  +   V       ++WDTAGQER+  +A  YYRGA A IIV+++ + AS E  K+W+ +   + +P+ V+  L G+K DL
Sbjct:   42 EHRTGTVGFKI--SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDL 170          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB34_HUMAN (Ras-related protein Rab-34 OS=Homo sapiens GN=RAB34 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   63 EHPMATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMA-LAGNKADLLDARKVTAEEAQA--YAQENGLFFMETSAKT 539
            EH   T G K   +K++++GD+  GK+ L+ RF K  F +  ++TIG  F  +   V       ++WDTAGQER+  +A  YYRGA A IIV+++ + AS E  K+W+ +   + +P+ V+  L G+K DL    +    E  A   AQE    +   S+ T
Sbjct:   42 EHRTGTVGFKI--SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKAEYWAVSSLT 201          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 54/156 (34.62%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   72 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA  G   I  KLVL+GD G GK++ + R + G+F +   +T+G    +     N   +KF +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D  KV A+    + ++N L + + SAK+
Sbjct:    1 MAGQGKPQIQFKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDIKD-MKVKAKPILFHRKKN-LQYYDISAKS 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABH_DICDI (Ras-related protein RabH OS=Dictyostelium discoideum GN=rabH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:   93 NINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTA 542
            NI  KL ++GD   GKSSL+ RF    F E  + ++G  FF +T+ +   ++  +I DT+G E++ SL   +Y      +IVYDI++Q +FE  K W+ E       + +  +  +K D L+ + V +   ++YA    L F ETS+K +
Sbjct:    5 NIKLKLTIIGDWNVGKSSLLYRFFNDVFYEQTKLSMGEHFFYKTVLIRGESIDLQITDTSGMEKFRSLNNSFYSNLDGILIVYDISDQETFENTKLWLNEANKLAPKDCIKIIVASKFD-LENKVVDSNIVKSYADNLNLKFFETSSKNS 153          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 52/152 (34.21%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   84 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            G   +  KLVL+GD G GK++ V R + G+F +   +T+G          N   +K+ +WDTAGQE++  L   YY  A  AII++D+T++ +++    W ++L  +   N+ + L GNK D+ D RKV A+    + ++N L + + SAK+
Sbjct:    4 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKN-LQYYDISAKS 152          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS2_PHYPO1.017e-1936.55Ras-like protein 2 OS=Physarum polycephalum GN=RAS... [more]
RAS3_RHIRA1.329e-1934.48Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAL_DISOM1.329e-1935.80Ras-related protein O-RAL OS=Discopyge ommata PE=2... [more]
RABZ_DICDI1.735e-1932.64Ras-related protein RabZ OS=Dictyostelium discoide... [more]
RAS2_NEUCR2.266e-1934.48Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RAB34_PIG2.266e-1938.17Ras-related protein Rab-34 OS=Sus scrofa GN=RAB34 ... [more]
RAB34_HUMAN2.266e-1935.19Ras-related protein Rab-34 OS=Homo sapiens GN=RAB3... [more]
RANT_RAT3.865e-1934.62GTP-binding nuclear protein Ran, testis-specific i... [more]
RABH_DICDI3.865e-1933.33Ras-related protein RabH OS=Dictyostelium discoide... [more]
RAN_SALSA5.048e-1934.21GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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