CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 51/156 (32.69%), Postives = 93/156 (59.62%), Query Frame = 3
Query:   78 TTGNKNIN-AKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            TT   N N  KL ++GD G GK+S+ ++F+   F+ + + TI  ++  Q L ++D     +I DTAGQ+   ++   + R     I+VY +T+++SF++ + + +++ +     ++ + + GNK+DL D R+VT +E +  A+  G+ FME SAKT
Sbjct:    2 TTNKSNGNLVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKT 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 45/150 (30.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:   87 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            N N + +L ++GD G GK+S+ ++F+   F+   + TI   +  Q L ++D     +I DTAGQ+  +++   + +     I+VY +T+++SF++ + ++ +++   +  + + +  NK+DL D R+VT +E + +A   G+ FME SAK
Sbjct:   10 NNNNSMRLCVMGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCL-IDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAK 158          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAS1_RHIRA (Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 50/145 (34.48%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQEL-QAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KLV++G  G GKS+L ++F++  F++  + TI  ++  Q + ++  T   ++ DTAGQE Y ++   Y R     ++VY IT++ SFE    + Q++ + +      M L GNK DL   R+V+++E +  A+  G  F+ETSAK
Sbjct:   12 KLVMVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDSETALLDVLDTAGQEEYSAMREQYMRNGEGFLLVYSITSRLSFEEITTFYQQICRVKDRDYFPMVLVGNKCDLEGDRQVSSQEGRDLAKNFGCQFIETSAK 155          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP2B_RAT (Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    Q ++ +    + M L GNK DL   R+V+  E +A A+E    FMETSAK
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAK 148          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP2B_MOUSE (Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    Q ++ +    + M L GNK DL   R+V+  E +A A+E    FMETSAK
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAK 148          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    Q ++ +    + M L GNK DL   R+V+  E +A A+E    FMETSAK
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAK 148          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKW-VQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+V+LG  G GKS+L ++FV G FIE  + TI   F+ + + V+ +    EI DTAG E++ S+  +Y +     I+VY + NQ SF+  K    Q ++ +    + M L GNK DL   R+V+  E +A A+E    FMETSAK
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAK 148          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RABY_DICDI (Ras-related protein RabY OS=Dictyostelium discoideum GN=rabY PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 46/146 (31.51%), Postives = 86/146 (58.90%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE--RYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+V++GD   GK+ L+ RFV+  + E    T    F  +T+ ++   +K +IWD+   E  R+++     YR A+  ++VYD TN+ SF   K W+++++  G PN +  +  NK+DL++ + + ++ A++Y     + F+ETS+K
Sbjct:   13 KIVIIGDRKTGKTCLMNRFVENTWSEEYRQTNLLHFKVKTIYIDCKIIKLQIWDSQADENFRFNNNNLSNYRSASGFLVVYDCTNENSFSNLKHWIKDIKLYGRPNAINIVVSNKSDLVNEKVIDSDVAKSYCDSLEIPFIETSSK 158          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.469e-18
Identity = 55/148 (37.16%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQAS---FERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGL-FFMETSAK 536
            K+V+LG  G GK+SL +RFV G F+E  + TI   +           +  EI DT+G ERY ++  +Y R A A ++VY IT++ S    E  K ++ +++ +    + M + GNK DL D R V  EE +A  ++ G+  F+ETSAK
Sbjct:    5 KVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAK 152          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.469e-18
Identity = 55/162 (33.95%), Postives = 97/162 (59.88%), Query Frame = 3
Query:   72 MATTGNKNINA----KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMV-MALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            MA   NKN ++    K++++G  G GKS+L L+F+  +F+E  E T  A  + + + ++   V+ +I DTAGQE Y ++   Y+R     ++V+ IT   SF    ++ ++ L+ +   + + + + GNK+DL D R+V  +EA+  A+E G+ ++ETSAKT
Sbjct:    1 MAANKNKNQSSLVLHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKT 161          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASY_DICDI8.611e-1932.69Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RASU_DICDI8.611e-1930.00Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RAS1_RHIRA8.611e-1934.48Ras-like protein 1 OS=Rhizomucor racemosus GN=RAS1... [more]
RAP2B_RAT8.611e-1939.31Ras-related protein Rap-2b OS=Rattus norvegicus GN... [more]
RAP2B_MOUSE8.611e-1939.31Ras-related protein Rap-2b OS=Mus musculus GN=Rap2... [more]
RAP2B_HUMAN8.611e-1939.31Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG8.611e-1939.31Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RABY_DICDI1.125e-1831.51Ras-related protein RabY OS=Dictyostelium discoide... [more]
RAPC_DICDI1.469e-1837.16Ras-related protein rapC OS=Dictyostelium discoide... [more]
RALBA_XENLA1.469e-1833.95Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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