CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 53/147 (36.05%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQE-LQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQE-NGLFFMETSAKT 539
            KLV+LG  G GKS+L ++FV+G F+E  + TI  ++  Q + V+      EI DTAG E++ ++  +Y +      +VY IT Q++F   +   ++ L+ +   ++ M L GNK DL D R V  E+ Q  A++ N   F+E+SAK+
Sbjct:    5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKS 150          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN1_SOLLC (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAN1_ARATH (GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T + +++    W ++L  +   N+ + L GNK D+ + R+V A++   + ++N L + E SAK+
Sbjct:   15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKS 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 49/151 (32.45%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLF-FMETSAK 536
            K++++G++G GK+S++ R+V   F +   +TIG  F  + L  +  T V+ ++WD AGQER+ ++  +YY+ A  A++V+DI+  + FE   KW  +L ++     G+P   + LA NK D          +   + +E+G   + ETSAK
Sbjct:   29 KVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLA-NKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAK 178          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_BOVIN1.796e-1636.05Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
RAN_VICFA1.796e-1634.48GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANB1_TOBAC1.796e-1634.48GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RANA1_TOBAC1.796e-1634.48GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ARATH1.796e-1634.48GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC1.796e-1634.48GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH1.796e-1634.48GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]
RAN1_SOLLC1.796e-1634.48GTP-binding nuclear protein Ran1 OS=Solanum lycope... [more]
RAN1_ARATH1.796e-1634.48GTP-binding nuclear protein Ran-1 OS=Arabidopsis t... [more]
RAB32_PIG1.796e-1632.45Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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