CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.494e-34
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K +++GD G GKS L+L+F   +F    + TIG  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++VYDIT + +F     W+++ +   N NMV+ L GNK+DL   R+V  EE +A+A+E+GL FMETSAKTA+
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTAS 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.257e-34
Identity = 69/144 (47.92%), Postives = 99/144 (68.75%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            KLV LG+   GK+SL+ RF+  QF    ++TIG  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R ++ AIIVYDITN  SF   +KW+++++A+   ++++ L GNK DL D R+VT EE +  A+E  +  METSAK
Sbjct:   13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAK 156          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 144.436 bits (363), Expect = 3.257e-34
Identity = 67/147 (45.58%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R V  +EA+A+A++N L F+ETSA  +T
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.257e-34
Identity = 67/147 (45.58%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R V  +EA+A+A++N L F+ETSA  +T
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 159          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 144.436 bits (363), Expect = 3.257e-34
Identity = 67/147 (45.58%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTAT 545
            K+VL+GD G GKS+L+ RF + +F    +STIG  F ++++ V+  T+K +IWDTAGQERY ++   YYRGA  A++VYDI    ++E  ++W++EL+   + N+V+ L GNK+DL   R V  +EA+A+A++N L F+ETSA  +T
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 159          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_PONAB2.494e-3445.58Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE2.494e-3445.58Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA2.494e-3445.58Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN2.494e-3445.58Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK2.494e-3445.58Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA2.494e-3445.58Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RYH1_SCHPO3.257e-3447.92GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RB11B_RAT3.257e-3445.58Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE3.257e-3445.58Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN3.257e-3445.58Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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