CX293830

Overview
NameCX293830
Unique NameCX293830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14581 contig Ccv1_Contig14581:79..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 3
Query:   42 NDKKVLLKFKKSLNNP--YVLASWN-PKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            N+ + L +FK+++      V+++WN P +D CDW  + C  + + +  + I A  + G + PE+G + YL+ L+ H    L G I   I  LKNLK L +   ++ GP+P  I  L+ +  + L  N L+G
Sbjct:   26 NEVQALRRFKEAIYEDPLLVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHG-NILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTG 155          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 3
Query:    9 ISPSLSDLCNPNDKKVLLKFKKSLNNPYVLASWNPKTDC-CDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPS--LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +S +   L   +D + LL  K+   +P + +SW+P+    C WY +TC    NR+ S++I    L     P   DL  L +L F  L S  L+GPI P+  KL +L+ L +S  ++SGP+P  + +L+ L FL L+ N LSG
Sbjct:   18 VSMAQPTLSLSSDGQALLSLKRP--SPSLFSSWDPQDQTPCSWYGITCS-ADNRVISVSIPDTFLNLSSIP---DLSSLSSLQFLNLSSTNLSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQFLILNANKLSG 153          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.654e-13
Identity = 45/143 (31.47%), Postives = 73/143 (51.05%), Query Frame = 3
Query:    3 LCISPSLSDLCNPNDKKVLLKFKKSLN-NPYVLASWNPKT-DCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            LC   + S   +P D + LL F+ ++  +   +  W P+  D C+W  VTCD  T R+ +L +    + G +PP++G L +L  LM H   +L G I  A+     L+ + +     +GP+P  +  L  L  L++S N LSG
Sbjct:   20 LCSLSNESQAISP-DGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHN-NALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSG 160          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.773e-13
Identity = 55/165 (33.33%), Postives = 76/165 (46.06%), Query Frame = 3
Query:   21 LSDLCNPN-----DKKVLLKFKKS-LNNPYVLASWNPKT-DCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFH------KLPS-----------------LTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            LS L N N     D + LL F+   L +  V+  W P+  D C+W  VTCD  T R+ +L++    L G +PPE+G L  L  LM H       +P+                 +TG I   I  L  LK L +S  N++G +P  + QL  LT   +S N L G
Sbjct:   19 LSALTNENEAISPDGEALLSFRNGVLASDGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVG 183          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 47/168 (27.98%), Postives = 82/168 (48.81%), Query Frame = 3
Query:    3 LCISPSLSDLCNPNDKKV--LLKFKKSLNNPY-VLASWNP-KTDCCDWYCVTCDLTT-----------------------NRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            LC   + S    P + +V  L+  K  L++P+ V  +W+    D C W  ++C                             +  +++   ++ G+IPPE+  LP L+TL        +G I  ++ +L NL+ LR++  ++SGP P  +SQ+ +L+FL+LS+NNL G
Sbjct:   18 LCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSN-NRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRG 184          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: PEPR2_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  129 DWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +W+ V CDL+ N + +L + A  L GQ+  E+G+L  L TL    L S +G +   +    +L+ L +S  + SG VPD    L NLTFL L  NNLSG
Sbjct:   65 NWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDL-SLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSG 162          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 3
Query:   36 NPNDKKVLLKFKKSL---NNPYVLASWNPKTDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNL 419
            N  D + LL+FK  +   N   VLASWN  +  C+W  VTC     R+ SL +    L G I P +G+L +L  L      S    I   + +L  L+ L +S+  + G +P  +S  + L+ ++LS N+L
Sbjct:   28 NETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLAD-NSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHL 157          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 3
Query:  102 SWNPKTDC-CDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            SW     C  +W  +TC+   NR+ S+++   +L G++P E+  L  L+TL     P L+GP+   I  L+ L  L +     +GP+PD I  L  LT L L+ N  SG
Sbjct:   48 SWKSSDPCGTEWVGITCN-NDNRVVSISLTNRNLKGKLPTEISTLSELQTLDLTGNPELSGPLPANIGNLRKLTFLSLMGCAFNGPIPDSIGNLEQLTRLSLNLNKFSG 155          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   93 VLASWNPK-TDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            VL SW+P   + C W+ VTC+   N +  + +   +L G + PE+G L  L+ L  +   ++TGPI   +  L NL +L +   + SGP+P+ + +L+ L FL L+ N+L+G
Sbjct:   46 VLQSWDPTLVNPCTWFHVTCN-NENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYS-NNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTG 155          
BLAST of CX293830 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.176e-11
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 3
Query:   93 VLASWNPK-TDCCDWYCVTCDLTTNRINSLTIFAGDLPGQIPPEVGDLPYLETL-MFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSG 425
            +L SWN      C W+ VTC+ T N +  L + + +L G++ P++  LP L+ L +F+   ++TG I   +  L  L +L +   NISGP+P  + +L  L FL L  N+LSG
Sbjct:   47 ILQSWNATHVTPCSWFHVTCN-TENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNN--NITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLSG 156          
The following BLAST results are available for this feature:
BLAST of CX293830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
Y1634_ARATH2.531e-1432.06Probable LRR receptor-like serine/threonine-protei... [more]
Y1341_ARATH3.654e-1335.92Probable LRR receptor-like serine/threonine-protei... [more]
FEI1_ARATH3.654e-1331.47LRR receptor-like serine/threonine-protein kinase ... [more]
FEI2_ARATH4.773e-1333.33LRR receptor-like serine/threonine-protein kinase ... [more]
Y2239_ARATH3.093e-1227.98Probable LRR receptor-like serine/threonine-protei... [more]
PEPR2_ARATH3.093e-1240.40Leucine-rich repeat receptor-like protein kinase P... [more]
EFR_ARATH4.040e-1232.82LRR receptor-like serine/threonine-protein kinase ... [more]
Y5977_ARATH9.001e-1234.86Probable leucine-rich repeat receptor-like protein... [more]
SERK1_ARATH9.001e-1234.82Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK5_ARATH1.176e-1136.28Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC05001C01SK FlavSen1 Citrus clementina cDNA clone C05001C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293830 ID=CX293830; Name=CX293830; organism=Citrus clementina; type=EST; length=425bp
GCCTTTGCATTTCCCCTTCACTCTCAGACCTCTGCAACCCAAATGACAAG
AAAGTGCTTCTCAAATTCAAAAAATCTTTGAACAACCCTTACGTTCTAGC
TTCTTGGAACCCAAAAACTGACTGCTGTGACTGGTACTGCGTCACATGCG
ATCTCACCACTAACCGCATCAACTCTCTCACCATCTTCGCCGGAGATCTC
CCCGGCCAGATCCCCCCCGAAGTTGGTGATCTTCCTTACCTCGAAACCCT
AATGTTTCACAAGCTACCCAGCCTCACTGGCCCCATACAACCCGCCATTG
CCAAGCTCAAAAACCTGAAGACGCTACGTATTAGCTGGACAAACATTTCT
GGGCCGGTTCCTGATTTTATCAGCCAACTCACCAACTTAACATTCTTGGA
GCTTTCATTTAACAATCTTTCTGGG
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