CX293831

Overview
NameCX293831
Unique NameCX293831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.158e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:  187 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD--RIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            +FFVGGN+K NGT ESIT ++ +LN+AKL+           +Y+   +    +  ++ +++QN +    GAFTGEISV QL+D
Sbjct:    4 QFFVGGNFKMNGTAESITAIIKNLNEAKLDETTEVVVSPPALYLTLAQQVADEKKKVAVSSQNVFDKPNGAFTGEISVSQLQD 86
[Close]
BLAST of CX293831 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:  181 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKD 429
            S  FFVGGN+K NG+ ESI  +V  LN ++L+          F Y+   K SL    + +A QNS+    GAFTGE+SV QLKD
Sbjct:    2 SRTFFVGGNFKMNGSLESIKAIVERLNASELDPKTEVVISPPFPYLLLAKESLKKPTVSVAGQNSFDKGDGAFTGEVSVAQLKD 85
The following BLAST results are available for this feature:
BLAST of CX293831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TPIS_ASPOR6.158e-1140.96Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_YARLI8.043e-1145.24Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionC05001C03SK FlavSen1 Citrus clementina cDNA clone C05001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293831 ID=CX293831; Name=CX293831; organism=Citrus clementina; type=EST; length=429bp
ATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCTCCACAAA
CTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAGTCTTTTT
CACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAGACCTCGC
CGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCTTTGTTGG
GGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAGCTTGTTT
CGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGTGGTAGCG
CCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAGATAGAAT
TGAGATAGCAGCTCAAAACTCTTGGGTCGGAAAAGGTGGAGCATTTACAG
GAGAAATCAGTGTGGAACAACTGAAAGAT
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