CX293833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3) HSP 1 Score: 178.333 bits (451), Expect = 1.900e-44 Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1 Query: 157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525 +++ +SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT K+ +V D PVR AKFVAR++W+V G+DD IRVF+YNT+ V FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K Sbjct: 8 KRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3) HSP 1 Score: 177.178 bits (448), Expect = 4.233e-44 Identity = 78/123 (63.41%), Postives = 100/123 (81.30%), Query Frame = 1 Query: 157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525 +++ SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT K+ +V D PVR AKFVAR++W+V G+DD IRVF+YNT+ V FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K Sbjct: 8 KRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_YEAST (Coatomer subunit beta' OS=Saccharomyces cerevisiae GN=SEC27 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 6.757e-42 Identity = 74/122 (60.66%), Postives = 97/122 (79.51%), Query Frame = 1 Query: 157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +K F +SDRVK +DFHPT+PWVL +LYSG V +WNY +Q +S++VT++PVR KF+AR++WI+ GSDD IRVF+YNT V +FEAH DYIRS+AVHPT P+VL+ SDD +KLW+WE Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 6.757e-42 Identity = 75/124 (60.48%), Postives = 99/124 (79.84%), Query Frame = 1 Query: 157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT-DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525 +K+ +SDRVKSVD HPT+PW+LASLY G V IWNY +Q KS +V+ ++PVRTA+F+A++ WIV GSDD +IRV++YNTM +K FEAH DYIR + VHPT P++L++SDD IKLWD+EK Sbjct: 8 KKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADYIRCIIVHPTLPYILSSSDDMFIKLWDYEK 131
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_CAEEL (Probable coatomer subunit beta' OS=Caenorhabditis elegans GN=F38E11.5 PE=2 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 9.758e-41 Identity = 71/122 (58.20%), Postives = 95/122 (77.87%), Query Frame = 1 Query: 157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +++ + +SDRVK VD HP + W+LA+LY+G V IWNY +QT KS +V D PVR AKFV R+ W+V GSDD IRVF+YNT+ V +FEAH DY+RSL VHPT P+V+++SDD L+K+WDW+ Sbjct: 8 KRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWD 129
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_SCHPO (Probable coatomer subunit beta' OS=Schizosaccharomyces pombe GN=sec27 PE=2 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 9.133e-39 Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 1 Query: 154 FQKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 FQ++ + ++RVK+VDFHPT+PWV+AS Y+G V IWNY++QT +S + D P+R F+AR++W VCGSDD +RV++YNT V +FEAH DYIR+L VHPT PF+LT+SDD IK ++W+ Sbjct: 6 FQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRACAFIARKNWFVCGSDDFQVRVYNYNTGEKVTQFEAHPDYIRALVVHPTQPFLLTSSDDMTIKCFNWD 128
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_DROME (Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 2.035e-38 Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1 Query: 157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525 ++ +SDRVK VD HP +PW+L +LY+G V I NY +Q K +V D PVR+A+FVAR++WI+ GSDD IRVF+YNT+ V FEAH DY+R +AVHPT P VLT+SDD LIKLW+WEK Sbjct: 8 KRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEK 130
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.025e-23 Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS+RVK + FHP +PW+LASL+SG + +W+Y T D PVR F A + V G DD I+V++Y T + H DYIR++ H +P++++ASDD+ I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 7.025e-23 Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS+RVK + FHP +PW+LASL+SG + +W+Y T D PVR F A + V G DD I+V++Y T + H DYIR++ H +P++++ASDD+ I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.670e-22 Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522 +F KS+RVK + FHP +PW+LASL+SG + +W+Y T D PVR F A + V G DD I+V++Y T + H DYIR++ H P++++ASDD+ I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIWNWQ 123 The following BLAST results are available for this feature:
BLAST of CX293833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293833 ID=CX293833; Name=CX293833; organism=Citrus clementina; type=EST; length=525bpback to top |