CX293833

Overview
NameCX293833
Unique NameCX293833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 1.900e-44
Identity = 78/123 (63.41%), Postives = 101/123 (82.11%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++   +SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT  K+ +V D PVR AKFVAR++W+V G+DD  IRVF+YNT+  V  FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K
Sbjct:    8 KRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 4.233e-44
Identity = 78/123 (63.41%), Postives = 100/123 (81.30%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +++    SDRVKSVD HPT+PW+LASLY+G+VC+WN+ +QT  K+ +V D PVR AKFVAR++W+V G+DD  IRVF+YNT+  V  FEAH DYIR +AVHPT PF+LT+SDD LIKLWDW+K
Sbjct:    8 KRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_YEAST (Coatomer subunit beta' OS=Saccharomyces cerevisiae GN=SEC27 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.757e-42
Identity = 74/122 (60.66%), Postives = 97/122 (79.51%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +K F  +SDRVK +DFHPT+PWVL +LYSG V +WNY +Q   +S++VT++PVR  KF+AR++WI+ GSDD  IRVF+YNT   V +FEAH DYIRS+AVHPT P+VL+ SDD  +KLW+WE
Sbjct:    6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.757e-42
Identity = 75/124 (60.48%), Postives = 99/124 (79.84%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT-DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            +K+   +SDRVKSVD HPT+PW+LASLY G V IWNY +Q   KS +V+ ++PVRTA+F+A++ WIV GSDD +IRV++YNTM  +K FEAH DYIR + VHPT P++L++SDD  IKLWD+EK
Sbjct:    8 KKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADYIRCIIVHPTLPYILSSSDDMFIKLWDYEK 131          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_CAEEL (Probable coatomer subunit beta' OS=Caenorhabditis elegans GN=F38E11.5 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 9.758e-41
Identity = 71/122 (58.20%), Postives = 95/122 (77.87%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +++ + +SDRVK VD HP + W+LA+LY+G V IWNY +QT  KS +V D PVR AKFV R+ W+V GSDD  IRVF+YNT+  V +FEAH DY+RSL VHPT P+V+++SDD L+K+WDW+
Sbjct:    8 KRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWD 129          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_SCHPO (Probable coatomer subunit beta' OS=Schizosaccharomyces pombe GN=sec27 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 9.133e-39
Identity = 68/123 (55.28%), Postives = 95/123 (77.24%), Query Frame = 1
Query:  154 FQKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            FQ++ +  ++RVK+VDFHPT+PWV+AS Y+G V IWNY++QT  +S  + D P+R   F+AR++W VCGSDD  +RV++YNT   V +FEAH DYIR+L VHPT PF+LT+SDD  IK ++W+
Sbjct:    6 FQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRACAFIARKNWFVCGSDDFQVRVYNYNTGEKVTQFEAHPDYIRALVVHPTQPFLLTSSDDMTIKCFNWD 128          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPB2_DROME (Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.035e-38
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1
Query:  157 QKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 525
            ++    +SDRVK VD HP +PW+L +LY+G V I NY +Q   K  +V D PVR+A+FVAR++WI+ GSDD  IRVF+YNT+  V  FEAH DY+R +AVHPT P VLT+SDD LIKLW+WEK
Sbjct:    8 KRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEK 130          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.025e-23
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS+RVK + FHP +PW+LASL+SG + +W+Y   T        D PVR   F A +   V G DD  I+V++Y T   +     H DYIR++  H  +P++++ASDD+ I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.025e-23
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS+RVK + FHP +PW+LASL+SG + +W+Y   T        D PVR   F A +   V G DD  I+V++Y T   +     H DYIR++  H  +P++++ASDD+ I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123          
BLAST of CX293833 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.670e-22
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  163 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 522
            +F  KS+RVK + FHP +PW+LASL+SG + +W+Y   T        D PVR   F A +   V G DD  I+V++Y T   +     H DYIR++  H   P++++ASDD+ I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIWNWQ 123          
The following BLAST results are available for this feature:
BLAST of CX293833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COPB2_BOVIN1.900e-4463.41Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1... [more]
COPB2_RAT4.233e-4463.41Coatomer subunit beta' OS=Rattus norvegicus GN=Cop... [more]
COPB2_YEAST6.757e-4260.66Coatomer subunit beta' OS=Saccharomyces cerevisiae... [more]
COPB2_DICDI6.757e-4260.48Coatomer subunit beta' OS=Dictyostelium discoideum... [more]
COPB2_CAEEL9.758e-4158.20Probable coatomer subunit beta' OS=Caenorhabditis ... [more]
COPB2_SCHPO9.133e-3955.28Probable coatomer subunit beta' OS=Schizosaccharom... [more]
COPB2_DROME2.035e-3858.54Coatomer subunit beta' OS=Drosophila melanogaster ... [more]
COPA3_ORYSJ7.025e-2340.00Coatomer subunit alpha-3 OS=Oryza sativa subsp. ja... [more]
COPA1_ORYSJ7.025e-2340.00Coatomer subunit alpha-1 OS=Oryza sativa subsp. ja... [more]
COPA2_ORYSJ2.670e-2240.00Coatomer subunit alpha-2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC05001C06SK FlavSen1 Citrus clementina cDNA clone C05001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293833 ID=CX293833; Name=CX293833; organism=Citrus clementina; type=EST; length=525bp
TATGATGAATTGTCGCAGCCTCTCGAACTTCAAATTGAGGTACGACTGAA
TATCCTCTTATGCTTGAAGCAACTTCAATTTATTCATTAATTATTTTAAT
GCAACTTTATTTAAATGTTTTTTTTTCCTAACTAGCTTAAAATAATTTCC
TGATTCCAGAAAGAATTCATCCAGAAATCTGATAGGGTAAAATCCGTGGA
TTTTCACCCAACTCAACCATGGGTTCTAGCAAGTTTGTACTCAGGAACTG
TGTGTATCTGGAATTACCATTCTCAGACAACTGAGAAGTCTGTCAAGGTC
ACTGACTCACCAGTGAGGACAGCCAAGTTTGTGGCACGAGAGCACTGGAT
CGTTTGTGGTTCCGATGACAAGTTCATACGTGTCTTCGATTATAACACAA
TGGCAAGTGTCAAGGAATTTGAGGCACATGAAGATTACATAAGGTCTCTG
GCTGTCCATCCTACTTTCCCATTCGTGCTGACGGCATCGGATGACAAGCT
TATAAAGCTGTGGGATTGGGAGAAG
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