CX293839

Overview
NameCX293839
Unique NameCX293839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.552e-14
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  162 FHENGAKVVIADVQDKLGEDLADKL---GQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVK 584
            F   GA V+++D++ +  E  A KL   G D   I  D++ E +V + V+    ++G+LDI+ NNAGI  +    I + P    E+LI V     F+  KH   +M  QQ G I+  AS    +   G  AY  +K+G++GL K
Sbjct:   23 FAREGASVIVSDLRPEACEKAASKLAEEGFDAAAIPYDVTKEAQVADTVNVIQKQYGRLDILVNNAGI--QHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTK 164          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_PHOLL (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=hcaB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.552e-14
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLER----LINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            +E F   GAKV + ++  +    LA   G D+C IH D+ + ++    V   V  FGKLD    NAGI D    S+LD     +++    L+ VN  G  LGAK AA   +   +G ++FT S  +  +G G   YT SK+G +G+++ L+
Sbjct:   23 IERFIAEGAKVGVLELSAEKATALAHCFGNDICVIHGDVVSFEDNERAVAETVRCFGKLDCFVGNAGIWDHKI-SLLDASPEQIDKGFDELMGVNLKGYILGAK-AALPALTASEGSMIFTLSNSSWFSGGGGVLYTASKHGAVGMIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  162 FHENGAKVVIADVQDKLGEDLADKLGQD--VCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVK 584
            F   GA+VV+ DV  +  E  A +LG D     + CD++  D+V  L+ TAV +FG LD+M NNAGI   +  ++    +   +++I V+  G + G + AA +M  +++G I+  +S   ++  +G   Y+ +K GI+G+ K
Sbjct:   27 FVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDA--TMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTK 167          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.458e-14
Identity = 47/143 (32.87%), Postives = 81/143 (56.64%), Query Frame = 3
Query:  162 FHENGAKVVIADVQDKLGEDLADKLGQD--VCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVK 584
            F   GA+VV+ DV  +  E  A +LG D     + CD++  D+V  L+ TAV +FG LD+M NNAGI   +  ++    +   +++I V+  G + G + AA +M  +++G I+  +S   ++  +G   Y+ +K GI+G+ K
Sbjct:   27 FVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDA--TMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTK 167          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_SHISS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella sonnei (strain Ss046) GN=hcaB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAARYPGGGGPLYTASKHAATGLIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCD2_DROME (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster GN=scu PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 47/151 (31.13%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  156 ELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAG----ILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQ------QKGCILFTASACTEIAGLGSPAYTISKYGILGL 578
            E   + GA V++AD+    G ++A +LG  V ++  D+++E +V   + TA  KFG+LD+  N AG    +   +F   +     D +R+IN+NT+G F   + +A +M         Q+G I+ TAS       +G  AY+ SK  ++G+
Sbjct:   22 ERLAKQGASVILADLPSSKGNEVAKELGDKVVFVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLSAGLMGANEPNQDGQRGVIVNTASVAAFDGQIGQAAYSASKAAVVGM 172          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: STCU_EMENI (Versicolorin reductase OS=Emericella nidulans GN=stcU PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 57/172 (33.14%), Postives = 85/172 (49.42%), Query Frame = 3
Query:   93 RLEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQDK-LGEDLADKL---GQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPA-YTISKYGILGLVKCLS 593
            RL+GKV                   + GAKVV+     +   E + D++   G D   I  D+ + D V  L+D AV  FG LDI+ +NAGI+  SFG + D    + +R+  VNT G F  A+ A R +  ++ G I+ T+S    + G+   A Y+ SK  I   V+CL+
Sbjct:    8 RLDGKVALVTGAGRGIGAAIAVALGQRGAKVVVNYANSREAAEKVVDEIKSNGSDAISIQADVGDPDAVTKLMDQAVEHFGYLDIVSSNAGIV--SFGHVKDVTPDEFDRVFRVNTRGQFFVAREAYRHL--REGGRIILTSSNTASVKGVPRHAVYSGSKGAIDTFVRCLA 175          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_SHIFL (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella flexneri GN=hcaB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTTSKHAATGLIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_SHIF8 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTTSKHAATGLIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_SHIBS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLA 171          
The following BLAST results are available for this feature:
BLAST of CX293839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
YXJF_BACSU1.552e-1434.03Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
HCAB_PHOLL1.552e-1434.443-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
Y1385_MYCBO3.458e-1432.87Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU3.458e-1432.87Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
HCAB_SHISS4.516e-1432.453-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCD2_DROME5.898e-1431.133-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophi... [more]
STCU_EMENI1.006e-1333.14Versicolorin reductase OS=Emericella nidulans GN=s... [more]
HCAB_SHIFL1.006e-1332.453-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_SHIF81.006e-1332.453-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_SHIBS1.006e-1332.453-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]

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Properties
Property NameValue
Genbank descriptionC05001D06SK FlavSen1 Citrus clementina cDNA clone C05001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293839 ID=CX293839; Name=CX293839; organism=Citrus clementina; type=EST; length=593bp
AGTTTCTTGTTCCTAACACCCTCTCTGCTTTTAATTAGTTTCAGGTTTTT
GAAGAAAAGATGAACGGCCCTTCTTCTGCAGCTCCCTTCAAAAGGTTAGA
AGGCAAAGTGGCAATCATCACCGGAGGAGCAAGCGGCATCGGAGCAATGG
CGGTTGAACTCTTCCATGAAAATGGCGCCAAAGTTGTTATTGCCGATGTC
CAGGATAAGCTTGGCGAAGACCTTGCTGATAAGCTGGGCCAAGATGTTTG
CTACATCCATTGTGATATCTCAAATGAAGATGAAGTCATCAATCTCGTTG
ATACCGCCGTTTCTAAATTTGGAAAGCTCGATATCATGTACAACAATGCA
GGAATTCTTGACCGCAGCTTTGGGAGCATTTTGGACACTCCAAAGTCTGA
TCTAGAACGCTTAATTAATGTAAACACTATAGGTGGTTTCTTAGGAGCCA
AGCATGCTGCAAGAGTCATGGTGCCACAGCAAAAAGGTTGCATACTGTTT
ACAGCTAGTGCTTGTACAGAAATTGCAGGGCTTGGCTCCCCTGCTTATAC
AATATCCAAATATGGGATTTTAGGACTAGTAAAGTGCTTGTCA
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