CX293839

Overview
NameCX293839
Unique NameCX293839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_ECO57 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O157:H7 GN=hcaB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 49/151 (32.45%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIAGE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_ECOSM (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    +D  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRALDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLU (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    V+  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVNQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 51/170 (30.00%), Postives = 79/170 (46.47%), Query Frame = 3
Query:   93 RLEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQDKLGEDLAD---KLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            RLE K                E+F   GA+V+I D+     E+  D   K G      H D+S+E+ V    D      G +DI++NNAG+ D+  G + + P    +R+I V+  G FL +K+   +M+ +  G I+ T+S     A L    Y  +K GI  L K ++
Sbjct:    3 RLENKTAVITGAATGIGQATAEVFANEGARVIIGDINKDQMEETVDAIRKNGGQAESFHLDVSDENSVKAFADQIKDACGTIDILFNNAGV-DQEGGKVHEYPVDLFDRIIAVDLRGTFLCSKYLIPLML-ENGGSIINTSSMSGRAADLDRSGYNAAKGGITNLTKAMA 170          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: HCAB_ECO7I (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.112e-12
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLS 593
            VE F E GA+V   ++       L  + G+ +  +  +++   +    +D  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  L AK  A  ++  + G ++FT S      G G P YT SK+   GL++ L+
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRALDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLSAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLA 171          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.897e-12
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = 3
Query:  174 GAKVVIADVQDKLGE--DLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVK 584
            GA + I       GE  ++ +K G +V ++   I+ E     ++     +FG +DI+ NNAGI       +LD  ++D + +I+VN    F  +  AA++M+PQ+ G I+   S  + + G  SPAY+ +K+ + G  K
Sbjct:   42 GANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGIC--KLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTK 178          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 3
Query:  153 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIH-CDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSD-LERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCL 590
            V L  ENGAK+V+   +    E +  K+G D   I   D++  DEV  L++TA + FG++D++ NNAG++ +SF   L+  K D   ++I+VN  G   G       M  Q+ G I+  AS    +   GS  Y  +KY +  + + L
Sbjct:   23 VNLLSENGAKLVLGARRLDRLEKIQQKVGHDSVSIKKTDVTKPDEVNALIETAYNDFGRIDVLINNAGLMPQSF---LEKNKQDEWNQMIDVNIKGVLYGIGAVLPYMRKQKSGHIINLASVAGHVVFPGSAVYCGTKYAVRAITEGL 167          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.237e-12
Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  156 ELFHENGAKV-VIADVQDKLGEDLADKLG----QDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGL 578
            +LF ENGAKV +  + Q+++   LA        ++V     D+++ D V+  V T   K+G+LD+M NNAGI   S  S +   + D + ++++N  G F GA  A + M   ++G I+ TAS       L    Y  SK G++GL
Sbjct:   24 KLFIENGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAPDLTSRDAVMAAVGTVAQKYGRLDVMINNAGITMNSVFSRVS--EEDFKNIMDINVNGVFNGAWSAYQCMKDAKQGVIINTASVTGIYGSLSGIGYPTSKAGVIGL 167          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: LINC_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.227e-12
Identity = 52/167 (31.14%), Postives = 77/167 (46.11%), Query Frame = 3
Query:   96 LEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERL---INVNTIGGFLGAKHAARVMVPQ-QKGCILFTASACTEIAGLGSPAYTISKYGILGLVK 584
            L GK               VEL   +GA V +AD+ D+ GE +    G    Y  CDI+ E++V  LV   ++ FG LD  +NNA I        L   +  LER    +++N  G FL  K+    M+ +  KG I+ TASA   +       Y  +K+ ++GL +
Sbjct:    4 LSGKTIIVTGGGSGIGRATVELLVASGANVPVADINDEAGEAVVATSGGKAAYFRCDIAQEEDVKALVAQTLAAFGGLDGSFNNAAIPQAG----LPLAEVSLERFRQSMDINVTGTFLCMKYQILAMIERGTKGSIVNTASAAGVVGVPMHGEYVGAKHAVVGLTR 166          
BLAST of CX293839 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  159 LFHENGAKVVIADVQDKLGEDLADKL---GQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISK 560
            L    GA V ++D+ ++LG     ++   G    ++H D++NE+     VDT +++  +LD + NNAGIL  +   + DT   + +R+  +N    FLG +     M    KGCI+  +S    +   G+ AY  SK
Sbjct:   25 LLAREGATVYLSDMNEELGHQAVAEIRRQGGKAHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGIL--TLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASK 159          
The following BLAST results are available for this feature:
BLAST of CX293839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HCAB_ECO571.716e-1332.453-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOSM2.241e-1331.793-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLU3.823e-1331.793-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
YXBG_BACSU1.112e-1230.00Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]
HCAB_ECO7I1.112e-1231.133-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
YGCW_ECOLI1.897e-1230.22Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
Y1627_STAS13.237e-1233.11Uncharacterized oxidoreductase SSP1627 OS=Staphylo... [more]
BAIA1_EUBSP3.237e-1233.56Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]
LINC_PSEPA4.227e-1231.142,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
CPNA_COMTE5.521e-1229.93Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]

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Properties
Property NameValue
Genbank descriptionC05001D06SK FlavSen1 Citrus clementina cDNA clone C05001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293839 ID=CX293839; Name=CX293839; organism=Citrus clementina; type=EST; length=593bp
AGTTTCTTGTTCCTAACACCCTCTCTGCTTTTAATTAGTTTCAGGTTTTT
GAAGAAAAGATGAACGGCCCTTCTTCTGCAGCTCCCTTCAAAAGGTTAGA
AGGCAAAGTGGCAATCATCACCGGAGGAGCAAGCGGCATCGGAGCAATGG
CGGTTGAACTCTTCCATGAAAATGGCGCCAAAGTTGTTATTGCCGATGTC
CAGGATAAGCTTGGCGAAGACCTTGCTGATAAGCTGGGCCAAGATGTTTG
CTACATCCATTGTGATATCTCAAATGAAGATGAAGTCATCAATCTCGTTG
ATACCGCCGTTTCTAAATTTGGAAAGCTCGATATCATGTACAACAATGCA
GGAATTCTTGACCGCAGCTTTGGGAGCATTTTGGACACTCCAAAGTCTGA
TCTAGAACGCTTAATTAATGTAAACACTATAGGTGGTTTCTTAGGAGCCA
AGCATGCTGCAAGAGTCATGGTGCCACAGCAAAAAGGTTGCATACTGTTT
ACAGCTAGTGCTTGTACAGAAATTGCAGGGCTTGGCTCCCCTGCTTATAC
AATATCCAAATATGGGATTTTAGGACTAGTAAAGTGCTTGTCA
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