CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            N   RQVTF KRR GL KKA ELS+LCDAEV L+VFS+ G+L+++A+ S+   IDRY
Sbjct:   32 NLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRY 88          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 32/59 (54.24%), Postives = 50/59 (84.75%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKK 420
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHK 71          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 32/59 (54.24%), Postives = 50/59 (84.75%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKK 420
            N++NRQVT+ KRRNG+LKKA E+SVLCDA V++I+F+S G+++E+++ S+   +D+Y K
Sbjct:   13 NSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHK 71          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 34/60 (56.67%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYK 417
            N+TNRQVTF KRR+G+LKKA E+SVLCDAEV +++FSS G+LY+Y +   S+   +++Y+
Sbjct:   13 NSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYKKA 423
            N+TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S+R  I++Y+ A
Sbjct:   13 NSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHA 74          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKACADSSNPGSITEANTQFYQQEA 489
            N T+RQVTF KRR GLLKK +ELSVLCDA++ LI+FSS+G+L+EY +  +S+   I RY +    S     + +   Q Y + A
Sbjct:   16 NKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASL---PVEDNRVQLYDEVA 96          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRAT--IDRYKKA 423
            N TNRQVTF KRR GLLKKA EL++LCDA++ +IVFS  G++YEY++   R     DRY KA
Sbjct:   13 NPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKA 74          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS--VRATIDRYKKACADS 435
            N TNRQVT+ KRR G++KKA EL+VLCDA+VA+I+FSS G+ +E+ + S  ++   DRY++A   S
Sbjct:   13 NATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTS 78          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  256 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            RQVTF KRR GL KKA ELSVLCDA+VALIVFSS G+L  +A++S+   ID+Y
Sbjct:   17 RQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKY 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN--SVRATIDRYK 417
            N TNRQVTF KRR GLLKKA EL+VLCDA V +++FSS G+++EY +   S+R  I+ Y+
Sbjct:   13 NATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ 72          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
MAD47_ORYSJ1.930e-1361.40MADS-box transcription factor 47 OS=Oryza sativa s... [more]
GLOB_TOBAC2.521e-1354.24Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY2.521e-1354.24Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MADS2_ORYSJ3.292e-1356.67MADS-box transcription factor 2 OS=Oryza sativa su... [more]
M17_MAIZE3.292e-1358.06MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
FBP24_PETHY3.292e-1347.62MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD31_ORYSJ5.615e-1359.68MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD16_ORYSJ5.615e-1353.03MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MAD22_ORYSJ9.578e-1367.92MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD29_ORYSJ1.251e-1258.33MADS-box transcription factor 29 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
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