CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN--NSVRATIDRYKKA 423
            N TNRQVT+ KRRNGL KKA+ELSVLCDA+V++I+ SS  +L+EY +   + +   D+Y+KA
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA 74          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY--ANNSVRATIDRYK 417
            N TNRQVT+ KRRNGL KKA+EL+VLCDA V++I+FSS  +L+EY   N + +  +D Y+
Sbjct:   13 NQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQ 72          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            N  NRQ TF KR+NGL+KKA ELS+LCD E+A+IVFSS  +L++Y++  +   + RY
Sbjct:   15 NERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY 71          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  RL++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  256 RQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            RQVTF KRR GL KKA EL+VLCDA+VAL+VFSS G+L ++A++++   ID+Y
Sbjct:   17 RQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKY 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ G++KKAYELSVLCD E+ALI+FSS  +LY+YA+  +   + +Y
Sbjct:   16 NRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKY 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
DEFA_ANTMA2.134e-1256.45Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP3_ARATH2.134e-1256.67Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
SRFC_DICDI3.640e-1254.39Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN3.640e-1259.26Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MAD55_ORYSJ3.640e-1262.26MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MEF2_DROME4.754e-1259.26Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2C_PONAB8.108e-1257.41Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG8.108e-1257.41Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE8.108e-1257.41Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN8.108e-1257.41Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
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