CX293840

Overview
NameCX293840
Unique NameCX293840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:1..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  253 NRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRY 414
            NRQVTF KR+ GL+KKAYELSVLCD E+ALI+F+S  +L++YA+  +   + +Y
Sbjct:   16 NRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69
[Close]
BLAST of CX293840 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:  244 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN-NSVRATIDRYKKACAD 432
            N ++RQVTF KRRNGL++KA +LSVLCDA VAL+V S+ G+LY +++ +++   +DRY K  AD
Sbjct:   13 NKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD 76
The following BLAST results are available for this feature:
BLAST of CX293840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
MEF2C_BOVIN8.108e-1257.41Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA8.108e-1257.41Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT8.108e-1257.41Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB8.108e-1257.41Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG8.108e-1257.41Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE8.108e-1257.41Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN8.108e-1257.41Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK8.108e-1257.41Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN8.108e-1257.41Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
FLC_ARATH8.108e-1254.69MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001D07SK FlavSen1 Citrus clementina cDNA clone C05001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293840 ID=CX293840; Name=CX293840; organism=Citrus clementina; type=EST; length=494bp
CTGACAAACTACACCAAAAAGAAGCGAGCTAGCTCTAGTGAAATTATCAA
GAATCCTTATTCCTCTTTAGGTCTTCTTTCCAGGTTATATTTAATTAATT
AGTATATGCATAATTAAAACAAAGATTACATGTGTAGCTCAAGCAAGTTA
CCAGCAACCATGGAGTTTCCAAAACAAAACCCAGAAAGCTCAAGCCAAAG
CAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGATCGAGAACACAA
CAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGATTGTTGAAGAAA
GCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGCTCTCATCGTCTT
CTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACAGTGTCAGAGCAA
CAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCTAACCCAGGATCT
ATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGCCACAAA
back to top