CX293843

Overview
NameCX293843
Unique NameCX293843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_PICST (Nascent polypeptide-associated complex subunit alpha OS=Pichia stipitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 49/135 (36.30%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  188 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQL-QTQAA----------------EQFKVPPPNTGNV--ASKPESSAMVQDDEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            KL +K I G++RVT K+  N+++ I  PDV++S  + TY+VFGEAK++D++ ++   QAA                E+ K P   T ++  AS  E     +++  VDE+G++ KDI++++ Q  V R++AVKAL
Sbjct:   28 KLNLKQIKGITRVTFKQRGNLIYAIDAPDVYRS-AAGTYVVFGEAKVDDMNQRIADAQAAQAAETDAHAGHTHSHGEEDKSPEAITADLEKASLTEKIEEEEEEGEVDESGLDAKDIDIIVEQTQVSRAKAVKAL 161          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_YARLI (Nascent polypeptide-associated complex subunit alpha OS=Yarrowia lipolytica GN=EGD2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 49/144 (34.03%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  188 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ--AAEQFKVPPPNTGNV-------------ASKP--------ESSAMVQDDEXVDE-----TGVEPKDIELVMTQAGVPRSRAVKAL 535
            KL ++ + G++RV +K+++  +FVI+ P+V+K+PT ++Y+VFGEA+ ED+ +  +    AA Q +     TG+V             ASK         E++++ +D++  DE     TG+E  DI+LVM QA V R++A+  L
Sbjct:   39 KLNLQKVEGITRVVLKRTRQHIFVIANPEVYKTPTGNSYVVFGEAQHEDMQATARAAQIAAAQAQQAAAETGSVSEAAAAGEVGAELASKDPASITADLEAASLSKDEDAEDEAEADATGLEDSDIKLVMEQANVSRNKAINGL 182          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 2
Query:  179 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQ----------------FKVPPPNT---------GNVASKPESSAMVQDDEXVDETGVEPKDIELVMTQAGVPRSRAVKA 532
            A+  LG+K + G+ RVT+++++N+L V+S P+V+KSP SD YIVFGEAK+ED +S  Q QA  Q                FK   P +            +S P  S    D     +  V  ++I+L++ Q GV  ++A +A
Sbjct:   33 ALEGLGLKRVQGIQRVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVEDPNSAAQLQAQAQLAASSQAAQQAHAHGGFKEGVPKSLEELMQDAPSTDSSAPAPSGEATDASASGDFKVSDEEIQLIVAQTGVDEAKAREA 175          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_YEAST (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae GN=EGD2 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.640e-14
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  188 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT--QAAEQFKVPPPNTGNVASKPE--------------SSAMVQDDE--XVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L    Q A+   + P N       PE              ++A  +DDE   VD   +   DIELV+ Q  V +++A+KAL
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKAL 158          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_YEAS7 (Nascent polypeptide-associated complex subunit alpha OS=Saccharomyces cerevisiae (strain YJM789) GN=EGD2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.640e-14
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 2
Query:  188 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQT--QAAEQFKVPPPNTGNVASKPE--------------SSAMVQDDE--XVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            KLG+K IPG+ RVT +K  N ++ I KP+VF+S     Y+VFGEAK+++ + +L    Q A+   + P N       PE              ++A  +DDE   VD   +   DIELV+ Q  V +++A+KAL
Sbjct:   26 KLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRS-AGGNYVVFGEAKVDNFTQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEEGEVDAGDLNKDDIELVVQQTNVSKNQAIKAL 158          
BLAST of CX293843 vs. ExPASy Swiss-Prot
Match: NACA_CANGA (Nascent polypeptide-associated complex subunit alpha OS=Candida glabrata GN=EGD2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 2
Query:  188 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQL---QTQAAEQFKVPPPNTGNVASKPESSAMVQD--------DEXVDETGVEPKDIELVMTQAGVPRSRAVKAL 535
            KLG+K +PG+ RVT +K  N +F I KP+VF+S     Y+VFGEAK+++ + +L   Q QA  Q     P   ++ +  +++A+  +        +E VD   +   DI+LV+ Q    + +A+KAL
Sbjct:   26 KLGLKKVPGIIRVTFRKKDNQIFAIEKPEVFRS-VGGNYVVFGEAKVDNFTQRLAAAQQQAQSQTATKTPE--DIQADMQAAAVANENKTEGDAAEEDVDAGDLSNDDIDLVVQQTNATKGQAIKAL 149          
The following BLAST results are available for this feature:
BLAST of CX293843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA_PICST2.530e-1536.30Nascent polypeptide-associated complex subunit alp... [more]
NACA_YARLI5.637e-1534.03Nascent polypeptide-associated complex subunit alp... [more]
NACA_CRYNE5.637e-1534.27Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAST1.640e-1436.57Nascent polypeptide-associated complex subunit alp... [more]
NACA_YEAS71.640e-1436.57Nascent polypeptide-associated complex subunit alp... [more]
NACA_CANGA2.368e-1334.65Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC05001E06SK FlavSen1 Citrus clementina cDNA clone C05001E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293843 ID=CX293843; Name=CX293843; organism=Citrus clementina; type=EST; length=537bp
CGCTGCCCATCTTGAAGAGCAAAAGCTCAACCCCGATGAGCCTGTAGTCG
AGGACGACGATNATGAGGATGATGATGAGGAGGATGAGGATGATGACAAG
GATGAAGACGATGTGGAAGGGAAAGGAGATGGAAGTGGTCGCTCAAAACA
GAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGTTGAAACTTGGAATGA
AGCCAATCCCTGGCGTCAGTCGAGTTACAGTTAAAAAGAGCAAAAATATT
TTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAGTCCTACATCTGACAC
ATACATTGTCTTTGGGGAAGCAAAGATCGAGGATCTGAGTTCACAACTGC
AAACTCAGGCTGCAGAGCAGTTCAAGGTCCCTCCTCCTAACACAGGTAAT
GTGGCATCAAAGCCTGAGTCATCGGCCATGGTTCAAGATGACGAANAAGT
AGATGAGACTGGTGTGGAGCCAAAGGACATTGAGTTGGTAATGACTCAAG
CTGGGGTACCGAGGTCAAGGGCTGTGAAAGCACTCAA
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