CX293844

Overview
NameCX293844
Unique NameCX293844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:257..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS22_CANAL (40S ribosomal protein S22 OS=Candida albicans GN=RPS22A PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.196e-24
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVI PRF+V + +IE WT  LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:   65 LNGRLNKCGVIQPRFNVKINDIERWTDNLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_PONAB (40S ribosomal protein S15a OS=Pongo abelii GN=RPS15A PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.196e-24
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GRLNKCGVISPRFDV +K++E W   L PSRQFG+IVLTTSAGIMDHEEARRK+ GGK+LGFF+
Sbjct:   65 LTGRLNKCGVISPRFDVQLKDLEKWQNNLFPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_ICTPU (40S ribosomal protein S15a OS=Ictalurus punctatus GN=rps15a PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.562e-24
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GRLNKCGVISPRFDV +K++E W   LLPSRQFG+IVLTTSAGIMDHEEARRK+ GGK LGFF+
Sbjct:   65 LTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKSLGFFF 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS22_ASHGO (40S ribosomal protein S22 OS=Ashbya gossypii GN=RPS22A PE=3 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.041e-24
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GRLNKCGVISPRF+V + ++E WTA LLP+RQFGY++LTTSAGIMDHEEA RK+V GK+LGF Y
Sbjct:   65 LTGRLNKCGVISPRFNVKINDVEKWTANLLPARQFGYVILTTSAGIMDHEEAHRKHVAGKILGFVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_DICDI (40S ribosomal protein S15a OS=Dictyostelium discoideum GN=rps15a PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 3.258e-22
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NKCGVISPRFDV + EIE W + LLPSRQFG+IVLTTS GIMDH EA+ ++ GGK+LGFFY
Sbjct:   65 LIGRINKCGVISPRFDVTLDEIEKWASYLLPSRQFGHIVLTTSLGIMDHNEAKTRHTGGKLLGFFY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS22_SCHPO (40S ribosomal protein S22 OS=Schizosaccharomyces pombe GN=rps22a PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.255e-22
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGR+NKCGVISPRF+V +K+IE W  +LLPSRQ G IVLTTS GIM H EAR K+ GGK+LGFFY
Sbjct:   65 LNGRINKCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS22_AGABI (40S ribosomal protein S22 OS=Agaricus bisporus GN=rps22 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.049e-20
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNK GVISPRF+V    IE W   LLPSR  G IVLTTS+GI+DHEEARRKNVGGK+LG+ Y
Sbjct:   65 LNGRLNKTGVISPRFNVQHNRIEQWINYLLPSRGIGIIVLTTSSGILDHEEARRKNVGGKLLGYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.155e-17
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+N C  ++ R DV  KEIE +T R LP+RQ+GY+V+TT  GI+DHEEA ++NVGG+VLGFFY
Sbjct:   64 LQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METLZ (30S ribosomal protein S8P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps8p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.181e-17
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L+G +NKCGVI+PRF V V+++E W  R LP + FG I+LTTS G+M HE+AR+  VGG++LG+ +
Sbjct:   65 LSGGINKCGVITPRFSVKVEDLESWEIRYLPGKGFGIIILTTSKGVMSHEQARKLGVGGELLGYVF 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METPE (30S ribosomal protein S8P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps8p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.566e-16
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L+GR+NKCG I+PR+ VG+ E+E W  R LP + FG ++L+TS G++ H +AR+  +GG++LGF Y
Sbjct:   65 LSGRINKCGAITPRYSVGLDELEYWETRYLPGKNFGLLILSTSRGVLTHNQARQNGIGGELLGFVY 130          
The following BLAST results are available for this feature:
BLAST of CX293844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS22_CANAL1.196e-2475.7640S ribosomal protein S22 OS=Candida albicans GN=R... [more]
RS15A_PONAB1.196e-2477.2740S ribosomal protein S15a OS=Pongo abelii GN=RPS1... [more]
RS15A_ICTPU1.562e-2478.7940S ribosomal protein S15a OS=Ictalurus punctatus ... [more]
RS22_ASHGO2.041e-2474.2440S ribosomal protein S22 OS=Ashbya gossypii GN=RP... [more]
RS15A_DICDI3.258e-2272.7340S ribosomal protein S15a OS=Dictyostelium discoi... [more]
RS22_SCHPO4.255e-2272.7340S ribosomal protein S22 OS=Schizosaccharomyces p... [more]
RS22_AGABI3.049e-2072.7340S ribosomal protein S22 OS=Agaricus bisporus GN=... [more]
R15A5_ARATH3.155e-1760.6140S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
RS8_METLZ9.181e-1754.5530S ribosomal protein S8P OS=Methanocorpusculum la... [more]
RS8_METPE1.566e-1650.0030S ribosomal protein S8P OS=Methanosphaerula palu... [more]

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Properties
Property NameValue
Genbank descriptionC05001E07SK FlavSen1 Citrus clementina cDNA clone C05001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293844 ID=CX293844; Name=CX293844; organism=Citrus clementina; type=EST; length=409bp
GCTGAATGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATG
TTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAGA
CAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACGA
AGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTACT
AGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTTTTTGTGTACTTTG
GAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTTA
ATTATGCATTTTTAAACTCGGATTGGTACTTTTTAGTTGAAGAAAGATGA
TATTATGTGTTACACACATTTATCTCTTAGCAGTTGAAAAAAAAAAAAAA
AAAAAAAAA
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