CX293844

Overview
NameCX293844
Unique NameCX293844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:257..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.261e-15
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+N C  ++ R DV   EI  +T R LP+RQ+GYIV+TT  GI+DHEEA ++NVGG+VLGFF+
Sbjct:   64 LQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_UNCMA (30S ribosomal protein S8P OS=Uncultured methanogenic archaeon RC-I GN=rps8p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.857e-15
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NKCGV+ PRF VG  E+E W  R LP+R FG ++LTTS G+M H +A +  +GG++L + Y
Sbjct:   65 LIGKINKCGVVKPRFAVGKTEMEKWEKRYLPARNFGTLILTTSKGVMSHYDAAKMGIGGEILAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METTP (30S ribosomal protein S8P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps8p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.038e-15
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+N+CGVI PRF + V E+E W  R LP+R FG ++L+TS G+M H +AR + +GG +L + Y
Sbjct:   64 LLGRINRCGVIKPRFAIKVAELEKWERRFLPARNFGVLILSTSQGVMPHTDARARGIGGHLLAYVY 129          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METBU (30S ribosomal protein S8P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps8p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.579e-15
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NKCG I PR+ VGV E E W  + LP++ FG ++LTT  G++   EAR  NVGG++L F Y
Sbjct:   65 LIGRINKCGAIKPRYSVGVTEFERWEKQFLPAKNFGVLILTTPKGVISQYEARENNVGGQLLSFVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METB6 (30S ribosomal protein S8P OS=Methanoregula boonei (strain 6A8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.593e-15
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NKCG I PRF V + E+E W  + LP + FG ++L+TS G+M H +ARR+ +GG++LG+ Y
Sbjct:   65 LTGKINKCGAICPRFSVQLDEMEYWEKQYLPGKNFGLMILSTSHGVMSHVQARREGIGGELLGYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METMJ (30S ribosomal protein S8P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.466e-14
Identity = 30/66 (45.45%), Postives = 50/66 (75.76%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L+G +NKCG ISPRF V + ++E W ++ LP++ FG ++++TS G++ H EAR + +GG++LG+ Y
Sbjct:   65 LSGTINKCGAISPRFPVAMADMEYWESQYLPAKNFGILIVSTSKGVISHAEARNEGIGGQLLGYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METMA (30S ribosomal protein S8P OS=Methanosarcina mazei GN=rps8p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NKCG I PR+ VG    E W  + LP++ FG ++LTTS+G+M   EAR K +GG++L + Y
Sbjct:   65 LVGRINKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALILTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_HALMA (30S ribosomal protein S8P OS=Haloarcula marismortui GN=rps8p PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.265e-14
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +N+CG + PR+  G  E E W  R LP+R +G +V+TTS GIM H EAR + VGG+V+ + Y
Sbjct:   65 LKGAINECGPVKPRYSAGADEFEKWEKRFLPARDYGTLVVTTSHGIMSHYEAREQGVGGQVIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.570e-14
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V+ + Y
Sbjct:   65 LKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQVIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METBF (30S ribosomal protein S8P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps8p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.570e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++L + Y
Sbjct:   65 LVGRVNKCGAIKPRYSVGTGSFERWEKQFLPAKNFGALIITTSSGVMSQYEAREKKIGGQLLAYVY 130          
The following BLAST results are available for this feature:
BLAST of CX293844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
R15A2_ARATH2.261e-1557.5840S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]
RS8_UNCMA3.857e-1550.0030S ribosomal protein S8P OS=Uncultured methanogen... [more]
RS8_METTP5.038e-1550.0030S ribosomal protein S8P OS=Methanosaeta thermoph... [more]
RS8_METBU6.579e-1551.5230S ribosomal protein S8P OS=Methanococcoides burt... [more]
RS8_METB68.593e-1548.4830S ribosomal protein S8P OS=Methanoregula boonei ... [more]
RS8_METMJ1.466e-1445.4530S ribosomal protein S8P OS=Methanoculleus marisn... [more]
RS8_METMA4.265e-1448.4830S ribosomal protein S8P OS=Methanosarcina mazei ... [more]
RS8_HALMA4.265e-1448.4830S ribosomal protein S8P OS=Haloarcula marismortu... [more]
RS8_NATPD5.570e-1443.9430S ribosomal protein S8P OS=Natronomonas pharaoni... [more]
RS8_METBF5.570e-1446.9730S ribosomal protein S8P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionC05001E07SK FlavSen1 Citrus clementina cDNA clone C05001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293844 ID=CX293844; Name=CX293844; organism=Citrus clementina; type=EST; length=409bp
GCTGAATGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATG
TTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAGA
CAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACGA
AGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTACT
AGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTTTTTGTGTACTTTG
GAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTTA
ATTATGCATTTTTAAACTCGGATTGGTACTTTTTAGTTGAAGAAAGATGA
TATTATGTGTTACACACATTTATCTCTTAGCAGTTGAAAAAAAAAAAAAA
AAAAAAAAA
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