CX293844

Overview
NameCX293844
Unique NameCX293844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:257..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METHJ (30S ribosomal protein S8P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps8p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            ++G +NKCG ISPR+ V + E+E W    LPS+  G ++++TS G+M H +ARR  VGG++LG+ Y
Sbjct:   65 MSGLINKCGCISPRYSVSLDEMEYWEQLYLPSKNIGMLMISTSKGVMGHHDARRNGVGGELLGYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METAC (30S ribosomal protein S8P OS=Methanosarcina acetivorans GN=rps8p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NKCG I PR+ VG    E W  + LP++ FG +++TTS+G+M   EAR K +GG++L + Y
Sbjct:   65 LVGRINKCGAIKPRYSVGTASFERWEKQFLPAKNFGALIVTTSSGVMSQYEARDKKIGGQLLAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_HALLT (30S ribosomal protein S8P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps8p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.274e-14
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V+ + Y
Sbjct:   65 LKGAINECGAVKPRYSAGADEFEKWEKRYLPARDYGTLIVTTSHGVMSHYEAREEGIGGQVIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.241e-13
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L+G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR   +GG+V+ + Y
Sbjct:   65 LSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQVIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_HALSA (30S ribosomal protein S8P OS=Halobacterium salinarium GN=rps8p PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:   65 LKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_HALS3 (30S ribosomal protein S8P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +N+CG ++PR+ VG    E W  R LP+R +G +V+TTS GIM H EAR   +GG+V+ + Y
Sbjct:   65 LKGAINECGPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYEAREAGIGGQVIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_PYRFU (30S ribosomal protein S8P OS=Pyrococcus furiosus GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NK G I PRF V V E E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:   65 LLGRINKAGAIKPRFPVKVSEFEKWEKRFLPAFEFGILIVSTSQGVMSHKEAIEKGIGGRLIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_PYRAB (30S ribosomal protein S8P OS=Pyrococcus abyssi GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EAR K +GG+++ + Y
Sbjct:   65 LLGKINKAGAIKPRFPVKARDYERWEKRFLPAFEFGILIVSTSQGVMSHKEAREKGIGGRLIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THESM (30S ribosomal protein S8P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NK G I PRF V  KE E W  R LP+ +FG +V++TS G+M H+EA  K +GG+++ + Y
Sbjct:   65 LLGKVNKAGAIKPRFSVKAKEYEKWEKRFLPAFEFGILVVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THEGJ (30S ribosomal protein S8P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps8p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NK G I PRF V  K  E W  R LP+ +FG ++++TS G+M H+EAR K +GG+++ + Y
Sbjct:   65 LIGKINKAGAIKPRFPVKAKNYEYWEKRFLPAFEFGILIVSTSQGVMTHKEAREKGIGGRLIAYVY 130          
The following BLAST results are available for this feature:
BLAST of CX293844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS8_METHJ7.274e-1446.9730S ribosomal protein S8P OS=Methanospirillum hung... [more]
RS8_METAC7.274e-1446.9730S ribosomal protein S8P OS=Methanosarcina acetiv... [more]
RS8_HALLT7.274e-1443.9430S ribosomal protein S8P OS=Halorubrum lacusprofu... [more]
RS8_HALWD1.241e-1343.9430S ribosomal protein S8P OS=Haloquadratum walsbyi... [more]
RS8_HALSA2.117e-1346.9730S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_HALS32.117e-1346.9730S ribosomal protein S8P OS=Halobacterium salinar... [more]
RS8_PYRFU2.764e-1346.9730S ribosomal protein S8P OS=Pyrococcus furiosus G... [more]
RS8_PYRAB3.610e-1343.9430S ribosomal protein S8P OS=Pyrococcus abyssi GN=... [more]
RS8_THESM4.715e-1346.9730S ribosomal protein S8P OS=Thermococcus sibiricu... [more]
RS8_THEGJ4.715e-1345.4530S ribosomal protein S8P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionC05001E07SK FlavSen1 Citrus clementina cDNA clone C05001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293844 ID=CX293844; Name=CX293844; organism=Citrus clementina; type=EST; length=409bp
GCTGAATGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATG
TTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAGA
CAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACGA
AGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTACT
AGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTTTTTGTGTACTTTG
GAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTTA
ATTATGCATTTTTAAACTCGGATTGGTACTTTTTAGTTGAAGAAAGATGA
TATTATGTGTTACACACATTTATCTCTTAGCAGTTGAAAAAAAAAAAAAA
AAAAAAAAA
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