CX293844

Overview
NameCX293844
Unique NameCX293844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:257..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_PYRHO (30S ribosomal protein S8P OS=Pyrococcus horikoshii GN=rps8p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.158e-13
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NK G I PRF V   E E W  R LP+ +FG ++++TS G+M H+EAR + +GG+++ + Y
Sbjct:   65 LLGRINKAGAIKPRFPVKATEYEKWEKRFLPAFEFGILIVSTSQGVMSHKEARDRGIGGRLIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THEON (30S ribosomal protein S8P OS=Thermococcus onnurineus (strain NA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NK G I PRF V  +E E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:   65 LIGKINKAGAIKPRFPVKAREYEAWEKRFLPAFEFGILIVSTSQGVMTHKEAIEKGIGGRLIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METKA (30S ribosomal protein S8P OS=Methanopyrus kandleri GN=rps8p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.372e-12
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+N CGVI PR  V   E E W  R LP+R FG +++TT  G+M H EA+ + +GG++L + Y
Sbjct:   65 LVGRINDCGVIKPRHPVKKDEWEYWEQRYLPARDFGLLIVTTPEGVMSHYEAKERGIGGRLLAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METIG (30S ribosomal protein S8P OS=Methanococcus igneus GN=rps8p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.340e-12
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NKCG I PR+ V   E E +  R LP+R FG ++++TS GIM H EA+ K +GG+++ + Y
Sbjct:   65 LIGKINKCGAIKPRYAVKKHEFEKFEKRYLPARDFGLLIVSTSQGIMTHYEAKEKGIGGRLISYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THEAC (30S ribosomal protein S8P OS=Thermoplasma acidophilum GN=rps8p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LN  +N CGVI PRF V  + +E + AR LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:   64 LNTTINNCGVIKPRFPVKNENLEKYEARYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_PYRKO (30S ribosomal protein S8P OS=Pyrococcus kodakaraensis GN=rps8p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NK G I PRF V  ++ E W  R LP+ +FG ++++TS G+M H+EA  K +GG+++ + Y
Sbjct:   65 LIGKINKAGAIKPRFPVKARDYEKWEKRFLPAFEFGILIVSTSQGVMTHKEALEKGIGGRLIAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_PICTO (30S ribosomal protein S8P OS=Picrophilus torridus GN=rps8p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L+  +N CGVI PR  V    IE + +R LP++ FG I+LTT+ GIM H EAR+  +GGK+L + Y
Sbjct:   64 LSDTINNCGVIKPRLSVKNSNIERYESRYLPAQDFGIIILTTTKGIMSHIEARKLGIGGKLLAYVY 129          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METS3 (30S ribosomal protein S8P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps8p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.213e-12
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +NKCGVI PR  V   E E +  R LP++ FG +++TT  GIM H EA+ + +GG++L + Y
Sbjct:   65 LEGNINKCGVIKPRHAVKKDEFEKFEKRYLPAKNFGILIVTTPEGIMTHYEAKERGIGGRLLAYMY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METJA (30S ribosomal protein S8P OS=Methanocaldococcus jannaschii GN=rps8p PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.213e-12
Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NKCG I PRF V     E +  R LP+R FG ++++T+ G+M HEEA+++ +GG++L + Y
Sbjct:   65 LIGKINKCGAIKPRFPVKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THEVO (30S ribosomal protein S8P OS=Thermoplasma volcanium GN=rps8p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LN  +N CGVI PRF V  + +E + +R LP+  FG ++LTT+ G+M + EAR+  +GGK+L + Y
Sbjct:   64 LNTTINNCGVIKPRFPVKNENLEKYESRYLPAEDFGILILTTTKGVMSNIEARKLGIGGKLLAYVY 129          
The following BLAST results are available for this feature:
BLAST of CX293844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS8_PYRHO6.158e-1345.4530S ribosomal protein S8P OS=Pyrococcus horikoshii... [more]
RS8_THEON1.050e-1243.9430S ribosomal protein S8P OS=Thermococcus onnurine... [more]
RS8_METKA1.372e-1246.9730S ribosomal protein S8P OS=Methanopyrus kandleri... [more]
RS8_METIG2.340e-1245.4530S ribosomal protein S8P OS=Methanococcus igneus ... [more]
RS8_THEAC3.056e-1246.9730S ribosomal protein S8P OS=Thermoplasma acidophi... [more]
RS8_PYRKO3.056e-1242.4230S ribosomal protein S8P OS=Pyrococcus kodakaraen... [more]
RS8_PICTO3.056e-1248.4830S ribosomal protein S8P OS=Picrophilus torridus ... [more]
RS8_METS35.213e-1245.4530S ribosomal protein S8P OS=Methanobrevibacter sm... [more]
RS8_METJA5.213e-1243.9430S ribosomal protein S8P OS=Methanocaldococcus ja... [more]
RS8_THEVO6.809e-1245.4530S ribosomal protein S8P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionC05001E07SK FlavSen1 Citrus clementina cDNA clone C05001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293844 ID=CX293844; Name=CX293844; organism=Citrus clementina; type=EST; length=409bp
GCTGAATGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATG
TTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAGA
CAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACGA
AGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTACT
AGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTTTTTGTGTACTTTG
GAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTTA
ATTATGCATTTTTAAACTCGGATTGGTACTTTTTAGTTGAAGAAAGATGA
TATTATGTGTTACACACATTTATCTCTTAGCAGTTGAAAAAAAAAAAAAA
AAAAAAAAA
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