CX293844

Overview
NameCX293844
Unique NameCX293844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+N  G I PRF V V E++ W  + LP+RQ G ++LTTS G++ H EAR   VGG ++ + Y
Sbjct:   65 LLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GR+NK GVI PR+ V   E E W    LPSR  G ++++T  G+M H EA+ K +GG +L + Y
Sbjct:   64 LLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++N  G I PRF V  +EI  W  + LP+RQ G +V++TS G+M H EA+ K +GG +L + Y
Sbjct:   65 LLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGR+NK GVI PRF V V E   W    LP+   G I+++T+ G+M H EA+ + +GG ++ + Y
Sbjct:   65 LNGRINKAGVIKPRFPVKVGEFSRWEKIYLPAENVGLIIVSTNQGVMTHREAKERGIGGVLIAYCY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11
Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   65 LIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11
Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:   65 LIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +N CGVI PR  V   E E +  R LP++ FG I+++T  GIM H+EA+ + +GG++L + Y
Sbjct:   65 LEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G +NKCGVI PR  V   E E +  R LP++ FG +++TT  G+M H EA+   +GG++L + Y
Sbjct:   65 LVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRLLVYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++N  G I PR+ V  +EI  W  + LP+RQ G +V++T+ G+M H EA+ K +GG +L + Y
Sbjct:   65 LLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 26/66 (39.39%), Postives = 45/66 (68.18%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L G++NKCG + PRF V  +E E +  R LP++ FG ++++T  G+M H+EA+   +GG+++ + Y
Sbjct:   65 LIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRLISYIY 130          
The following BLAST results are available for this feature:
BLAST of CX293844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS8_CALMQ6.809e-1246.9730S ribosomal protein S8P OS=Caldivirga maquilinge... [more]
RS8_THEPD1.161e-1145.4530S ribosomal protein S8P OS=Thermofilum pendens (... [more]
RS8_PYRCJ1.517e-1145.4530S ribosomal protein S8P OS=Pyrobaculum calidifon... [more]
RS8_KORCO1.517e-1143.9430S ribosomal protein S8P OS=Korarchaeum cryptofil... [more]
RS8_METVS3.379e-1140.9130S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_METVA3.379e-1140.9130S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_METTH4.413e-1143.9430S ribosomal protein S8P OS=Methanobacterium ther... [more]
RS8_METST4.413e-1143.9430S ribosomal protein S8P OS=Methanosphaera stadtm... [more]
RS8_THENV5.764e-1142.4230S ribosomal protein S8P OS=Thermoproteus neutrop... [more]
RS8_METVO5.764e-1139.3930S ribosomal protein S8P OS=Methanococcus voltae ... [more]

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Properties
Property NameValue
Genbank descriptionC05001E07SK FlavSen1 Citrus clementina cDNA clone C05001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293844 ID=CX293844; Name=CX293844; organism=Citrus clementina; type=EST; length=409bp
GCTGAATGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATG
TTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAGA
CAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACGA
AGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTACT
AGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTTTTTGTGTACTTTG
GAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTTA
ATTATGCATTTTTAAACTCGGATTGGTACTTTTTAGTTGAAGAAAGATGA
TATTATGTGTTACACACATTTATCTCTTAGCAGTTGAAAAAAAAAAAAAA
AAAAAAAAA
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