CX293844
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_CALMQ (30S ribosomal protein S8P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps8p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12 Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L GR+N G I PRF V V E++ W + LP+RQ G ++LTTS G++ H EAR VGG ++ + Y Sbjct: 65 LLGRINDIGAIKPRFHVKVDELQKWEEKYLPARQVGILILTTSKGVVSHLEARENRVGGILVAYVY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THEPD (30S ribosomal protein S8P OS=Thermofilum pendens (strain Hrk 5) GN=rps8p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11 Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L GR+NK GVI PR+ V E E W LPSR G ++++T G+M H EA+ K +GG +L + Y Sbjct: 64 LLGRINKIGVIKPRYPVKKNEFEAWEREYLPSRDVGLLIVSTPKGVMTHREAKEKGLGGVLLAYVY 129
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_PYRCJ (30S ribosomal protein S8P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps8p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L G++N G I PRF V +EI W + LP+RQ G +V++TS G+M H EA+ K +GG +L + Y Sbjct: 65 LLGKINDIGAIRPRFPVKYREIVEWEQKYLPARQIGILVISTSQGVMSHLEAKEKKIGGVLLAYVY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_KORCO (30S ribosomal protein S8P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps8p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11 Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 LNGR+NK GVI PRF V V E W LP+ G I+++T+ G+M H EA+ + +GG ++ + Y Sbjct: 65 LNGRINKAGVIKPRFPVKVGEFSRWEKIYLPAENVGLIIVSTNQGVMTHREAKERGIGGVLIAYCY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11 Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L G++NKCG + PR+ V +E E + R LP++ FG ++++T G+M H+EAR VGG+++ + Y Sbjct: 65 LIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11 Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L G++NKCG + PR+ V +E E + R LP++ FG ++++T G+M H+EAR VGG+++ + Y Sbjct: 65 LIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METTH (30S ribosomal protein S8P OS=Methanobacterium thermoautotrophicum GN=rps8p PE=3 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11 Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L G +N CGVI PR V E E + R LP++ FG I+++T GIM H+EA+ + +GG++L + Y Sbjct: 65 LEGNINHCGVIKPRHAVKKDEFEKFEKRYLPAKNFGIIIVSTPEGIMTHKEAKDRGIGGRLLAYVY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.413e-11 Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L G +NKCGVI PR V E E + R LP++ FG +++TT G+M H EA+ +GG++L + Y Sbjct: 65 LVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRLLVYVY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_THENV (30S ribosomal protein S8P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps8p PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11 Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L G++N G I PR+ V +EI W + LP+RQ G +V++T+ G+M H EA+ K +GG +L + Y Sbjct: 65 LLGKINDIGPIKPRYPVKYREIVQWEQKFLPARQIGILVISTNQGVMSHVEAKEKKIGGVLLAYVY 130
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11 Identity = 26/66 (39.39%), Postives = 45/66 (68.18%), Query Frame = 2 Query: 2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199 L G++NKCG + PRF V +E E + R LP++ FG ++++T G+M H+EA+ +GG+++ + Y Sbjct: 65 LIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRLISYIY 130 The following BLAST results are available for this feature:
BLAST of CX293844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293844 ID=CX293844; Name=CX293844; organism=Citrus clementina; type=EST; length=409bpback to top |