CX293847
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24 Identity = 58/181 (32.04%), Postives = 95/181 (52.49%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCME 555 ++ +L ++ + + +L+ RD E WM V + + +W G DE ++ LP LRR I+R+LCLDL+++VPLF C+R+ + ++ I+REGDPV M+FI+RG+++ + G + L PG F G+ELL+W L LP+S+ T +E Sbjct: 398 MQTYLQSITVRLEEWRLKRRDTEEWMGHRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALE 578
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.579e-24 Identity = 58/176 (32.95%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L ++ + + +L+ RD E WM V YE+ +W G DE L++ LP LRR I+R+LCLDL+++VP F C+R+ + ++ ++REGD + M+FI+RGR++ + G + +L PG F G+ELLSW L LP+S+ T Sbjct: 398 MQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRT 573
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.579e-24 Identity = 61/176 (34.66%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 V+ +L + A+ + ++R RD E WM V + + +W T G DE +++ LP LRR I+R+LCL L+++VP F C+R+ P + +KD +IREGDPV M+FI+RG+++ + G + L PG F G+ELL+W L LP S+ T Sbjct: 374 VQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPDELQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRT 549
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.120e-23 Identity = 57/176 (32.39%), Postives = 93/176 (52.84%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L + + + ++R D E WM V Y++ +W G DE L+ LP LRR IKR+LC DL+++VPLF C+R++P + ++ ++REGDPV M+FI+RG + + G + ++ PG F G+ELL+W L + LP+S+ T Sbjct: 388 MQTYLQSTTMRLEEWRIRRTDTEQWMHHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRT 563
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 4.421e-21 Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 +L + + +M+++ RD E WM + YE+ +W G +E L+ LP+ LR+ IKR+LCL L+KKVP F C R++ ++Y++ I+REG+PV M+FI+RG + + G + L G F GD LL+W L P + P SS T Sbjct: 397 YLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWAL-DPLSSQFPISSRT 567
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.168e-19 Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 1 Query: 31 LHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASS 534 L ++ + + +++ RD E WM V + + +W G DE ++ LP LRR I+R+LCL L+++VP F C + + + I REGDPV M+F++RG+I+ + G ++ L PG F G+ELL+W L LP+S+ Sbjct: 370 LQSMSVRVEEWRVKRRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSST 539
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 7.304e-16 Identity = 55/176 (31.25%), Postives = 84/176 (47.73%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 V+ +L + + +M+ + RD E WM + +E +W G +E L++ LP+ LR KRYL L L+KKVPL C R++ + Y++ I+REG+PV M+FI+RG + + G + L G GD LL+W L + P SS T Sbjct: 352 VQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWAL-YSLSSQFPISSRT 525
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.055e-14 Identity = 51/163 (31.29%), Postives = 80/163 (49.08%), Query Frame = 1 Query: 28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID 516 FL A+ + +M LR RD+E WM V ER WA G +E L +++P+ L+R I+R+L +KKV +F +R++ Y ++ G V +MVFIVRG + +S+ + + E G G+ELL+WCL R ++ Sbjct: 514 FLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEM---ESIGEDGSVLPLYE-GDVCGEELLTWCLERSSVN 671
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14 Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFH-XXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSV--LEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 V+ +L + + +M+ + RD E WM + +E +W G +E L++ LP+ LR KRYL LD++K+VP + CDRV+ + Y + I+REG PV M+ + RG++K + V + L+ G G+ L + RLP S+ T Sbjct: 352 VQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRT 521
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14 Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCL 498 FL ++ ++ +M LR RD+E WM V ER WA G +E L +++P+ L+R I+R+L +KKV +F +R++ Y + ++ V +MVFIVRG ++ G V L G G+ELL+WCL Sbjct: 481 FLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESIG--EDGSVLP--LSEGDVCGEELLTWCL 632 The following BLAST results are available for this feature:
BLAST of CX293847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293847 ID=CX293847; Name=CX293847; organism=Citrus clementina; type=EST; length=558bpback to top |