CX293847

Overview
NameCX293847
Unique NameCX293847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 58/181 (32.04%), Postives = 95/181 (52.49%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCME 555
            ++ +L ++  +  + +L+ RD E WM            V  + + +W    G DE  ++  LP  LRR I+R+LCLDL+++VPLF           C+R+   + ++   I+REGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP+S+ T   +E
Sbjct:  398 MQTYLQSITVRLEEWRLKRRDTEEWMGHRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALE 578          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.579e-24
Identity = 58/176 (32.95%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L ++  +  + +L+ RD E WM            V  YE+ +W    G DE  L++ LP  LRR I+R+LCLDL+++VP F           C+R+   + ++   ++REGD +  M+FI+RGR++   +     G   + +L PG F G+ELLSW L       LP+S+ T
Sbjct:  398 MQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTLNLPSSTRT 573          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.579e-24
Identity = 61/176 (34.66%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            V+ +L +  A+  + ++R RD E WM            V  + + +W T  G DE  +++ LP  LRR I+R+LCL L+++VP F           C+R+ P + +KD  +IREGDPV  M+FI+RG+++   +     G   +  L PG F G+ELL+W L       LP S+ T
Sbjct:  374 VQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPDELQERVRRFVQYKWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRT 549          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.120e-23
Identity = 57/176 (32.39%), Postives = 93/176 (52.84%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L +   +  + ++R  D E WM            V  Y++ +W    G DE  L+  LP  LRR IKR+LC DL+++VPLF           C+R++P + ++   ++REGDPV  M+FI+RG +    +     G   + ++ PG F G+ELL+W L    +  LP+S+ T
Sbjct:  388 MQTYLQSTTMRLEEWRIRRTDTEQWMHHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWALDPRPVVILPSSTRT 563          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.421e-21
Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 1
Query:   28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            +L +   +  +M+++ RD E WM            +  YE+ +W    G +E  L+  LP+ LR+ IKR+LCL L+KKVP F           C R++ ++Y++   I+REG+PV  M+FI+RG +    +     G   +  L  G F GD LL+W L  P   + P SS T
Sbjct:  397 YLQSTTVRVEEMRVKRRDAEQWMSHRMLPDDLRKRIRKYEQYKWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWAL-DPLSSQFPISSRT 567          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.168e-19
Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 1
Query:   31 LHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASS 534
            L ++  +  + +++ RD E WM            V  + + +W    G DE  ++  LP  LRR I+R+LCL L+++VP F           C  +   + +    I REGDPV  M+F++RG+I+   +     G   ++ L PG F G+ELL+W L       LP+S+
Sbjct:  370 LQSMSVRVEEWRVKRRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSST 539          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.304e-16
Identity = 55/176 (31.25%), Postives = 84/176 (47.73%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            V+ +L +   +  +M+ + RD E WM            +  +E  +W    G +E  L++ LP+ LR   KRYL L L+KKVPL            C R++ + Y++   I+REG+PV  M+FI+RG +    +     G   +  L  G   GD LL+W L      + P SS T
Sbjct:  352 VQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPEYLKERIRRFEDYKWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWAL-YSLSSQFPISSRT 525          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.055e-14
Identity = 51/163 (31.29%), Postives = 80/163 (49.08%), Query Frame = 1
Query:   28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID 516
            FL A+  +  +M LR RD+E WM            V   ER  WA   G +E  L +++P+ L+R I+R+L    +KKV +F            +R++   Y     ++  G  V +MVFIVRG +   +S+ +      + E G   G+ELL+WCL R  ++
Sbjct:  514 FLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEM---ESIGEDGSVLPLYE-GDVCGEELLTWCLERSSVN 671          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFH-XXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSV--LEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            V+ +L +   +  +M+ + RD E WM            +  +E  +W    G +E  L++ LP+ LR   KRYL LD++K+VP  +           CDRV+ + Y  +  I+REG PV  M+ + RG++K      +  V  +   L+ G   G+ L +         RLP S+ T
Sbjct:  352 VQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPEYLKERIRRFEDYKWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRT 521          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 1
Query:   28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCL 498
            FL ++  ++ +M LR RD+E WM            V   ER  WA   G +E  L +++P+ L+R I+R+L    +KKV +F            +R++   Y +   ++     V +MVFIVRG ++       G V    L  G   G+ELL+WCL
Sbjct:  481 FLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESIG--EDGSVLP--LSEGDVCGEELLTWCL 632          
The following BLAST results are available for this feature:
BLAST of CX293847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNG14_ARATH3.271e-2432.04Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNG17_ARATH5.579e-2432.95Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNG16_ARATH5.579e-2434.66Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG15_ARATH2.120e-2332.39Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNGC3_ARATH4.421e-2133.53Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG18_ARATH3.168e-1930.59Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNG11_ARATH7.304e-1631.25Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG20_ARATH1.055e-1431.29Probable cyclic nucleotide-gated ion channel 20, c... [more]
CNG12_ARATH1.799e-1428.81Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNG19_ARATH6.836e-1431.21Putative cyclic nucleotide-gated ion channel 19 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05001E10SK FlavSen1 Citrus clementina cDNA clone C05001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293847 ID=CX293847; Name=CX293847; organism=Citrus clementina; type=EST; length=558bp
GCACGAGGTGCTGTTGCTGTGAAGGTGTTTTTGCATGCTGTAATGGCAAA
GAAGCGAAAGATGCAGCTGAGGTGCCGAGACATGGAATGGTGGATGAGAC
GGAGGCAGCTGCCGTCGCGTTTGAGACAGAGAGTTCACCATTATGAGCGT
CAAAGATGGGCAACAATGGGAGGAGAAGATGAGATGGAACTGATCAAAGA
CTTGCCGGAAGGGCTGAGGCGTGGCATTAAACGGTATCTCTGCCTTGATC
TTATAAAAAAGGTACCTTTGTTCCACAACCTGGATGATCTCATTCTTGAC
AACATATGTGACAGAGTTAGGCCCCTTGTATACTCTAAAGATGAAAAGAT
AATCAGAGAAGGGGATCCTGTGCCAAGAATGGTGTTCATTGTTCGTGGAC
GGATTAAACGTTGCCAAAGCCTAAGCAAAGGCATGGTAGCAACAAGTGTG
CTTGAACCAGGAGGGTTTCTGGGTGATGAGTTGCTTTCCTGGTGCCTGCG
CCGCCCGTTTATCGATCGGCTGCCAGCATCATCAGCAACATTTTTTTGTA
TGGAATCC
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