CX293848

Overview
NameCX293848
Unique NameCX293848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 50/149 (33.56%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ +  L+ H   Q++ ++E+   F N  P  Y  L  ++ + M++ E LR++P    L R   K+ ++  +T+P G  + +P+ ++H +PELW  +  EF+PERF++  +K + N   Y PF +GPR C+G  FA++  K+A
Sbjct:  309 TTSSTLSFIIYELTTHPHVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFPIAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELW-PEPEEFRPERFSKN-NKDSINPYVYLPFGTGPRNCLGMRFAIMNIKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++T+  L+ H D Q++ + E+ +   N  P  Y  +  ++ + M+L E LRLYP    L R   K+ +L  + +P G  + +P   +H DP+ W +   EF+PERF++  +K + +   Y PF +GPR C+G  FAL+  K+A
Sbjct:  310 TTSSTLSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWSEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLA 456          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 48/148 (32.43%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTAL-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT++ L+++  LL++H + Q++ ++EV +   N +  + +++ LK ++ ++ E LR+YP  + + +R  +KET +  + +  G  + +    +H DP++WG+DA EF+PER+  G  +    +  Y PF  GPRIC+G   A++E KM
Sbjct:  330 TTALSLSYSSYLLARHPEIQKKLQEEVDRECPNPEVTFDQISKLKYMECVVKEALRMYPLASIVHNRKCMKETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESG-DELFYAKGGYLPFGMGPRICIGMRLAMMEKKM 476          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS  L++ + LL+ H D Q++ + E+     N  P  Y  L  ++ + M++ E LRLYP    L R    + ++  L +P G  + +P   +H+DP+ W  +  EF+PERF++  ++ + N   Y PF SGPR C+G  FAL+  K+A
Sbjct:  309 TTSSALSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYW-PEPEEFRPERFSKK-NQDSINPYMYLPFGSGPRNCIGMRFALINMKVA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13AA_CAEEL (Putative cytochrome P450 CYP13A10 OS=Caenorhabditis elegans GN=cyp-13A10 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 54/148 (36.49%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLT-ALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT++ L++T  LL+ H + Q++ ++E+ +        +  L+ LK +  I+ E LRLYP  T A SR  ++ TKLGN+ +  G  + +    +H D ++WGDDA EFKPER+ +        +  Y  F  GPR CVG   A +E KM
Sbjct:  330 TTALSLSYTTFLLATHPEVQKKLQEEIERECIEPSISFDHLSKLKYMDCIIKETLRLYPLGTMANSRRCMRATKLGNVEVEVGTMVQVDTWSLHTDTKIWGDDAKEFKPERWLDPNCDQVFQKGGYISFGLGPRQCVGMRLAYMEEKM 477          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 49/148 (33.11%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYP-PLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKM 441
            TT++ L++   LL+ H + Q + ++EV +   + +  +  L+ LK ++ ++ E LRLYP   TA +R  ++ET +  +    G+ I +    +H +P +WG+D  +FKPER+  G  +  ++  SY PF SGPR C+G   A +E K+
Sbjct:  328 TTALSLSYATYLLATHPEIQTKLQEEVDRECPDPEIFFDHLSKLKYLECVMKETLRLYPLGTTANTRKCMRETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQKI 475          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4F3_RAT (Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus norvegicus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.775e-20
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TT+  L+W +  L+KH ++QER RQEV ++  + +P   ++ +L  L  + M + E LRL+PP TA+SR   ++  L     +P GV   + +   H +P +W D  V + P RF     K  ++ +++ PF++GPR C+GQ FA+ E K+A
Sbjct:  332 TTASGLSWILYNLAKHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPATAISRCCTQDIMLPDGRVIPKGVICRISIFGTHHNPAVWPDPEV-YNPFRFDADNGK-GRSPLAFIPFSAGPRNCIGQTFAMSEMKVA 481          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CYPE_BACSU (Probable bifunctional P-450/NADPH-P450 reductase 2 OS=Bacillus subtilis GN=cypE PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.543e-20
Identity = 53/151 (35.10%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATG 450
            TTS LL++ +  L  H +  ++A++E  +V  ++ P+Y ++  LK ++M+L E LRLYP   A S    ++T L G   +  G  + + +  +H+D   WG DA +F+PERF +    ++    +Y PF +G R C+G  FAL EA M  G
Sbjct:  271 TTSGLLSFAIYCLLTHPEKLKKAQEEADRVLTDDTPEYKQIQQLKYIRMVLNETLRLYPTAPAFSLYAKEDTVLGGEYPISKGQPVTVLIPKLHRDQNAWGPDAEDFRPERFED---PSSIPHHAYKPFGNGQRACIGMQFALQEATMVLG 418          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.543e-20
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFASGPRICVGQNFALVEAKMA 444
            TTS +L++ +  L+ H D Q++ ++E+  V  N  P  Y  +  L+ + M++ E LRL+P    L R   K+ ++  + +P GV + +P  ++H DP+ W +   +F PERF    SK  K+ +    Y PF SGPR C+G  FALV  K+A
Sbjct:  309 TTSSVLSFIIYELATHPDVQQKVQKEIDTVLPNKAPPTYDTVLQLEYLDMVVNETLRLFPVAMRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPE-KFLPERF----SKKNKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.543e-20
Identity = 50/149 (33.56%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TTS +L++T+  L+ H D Q++ ++E+  V  N  P  Y  +  ++ + M++ E LRL+P    L R   K+ ++  + +P G  + +P   +H DP+ W  +  EF+PERF++   K + +   Y PF +GPR C+G  FAL+  K+A
Sbjct:  309 TTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYW-TEPEEFRPERFSK--KKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLA 454          
The following BLAST results are available for this feature:
BLAST of CX293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
CP3AS_BOVIN1.985e-2033.56Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3AB_MOUSE1.985e-2034.90Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
C13A5_CAEEL1.985e-2032.43Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
CP3AD_MOUSE2.592e-2034.90Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
C13AA_CAEEL2.592e-2036.49Putative cytochrome P450 CYP13A10 OS=Caenorhabditi... [more]
C13A6_CAEEL2.592e-2033.11Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
CP4F3_RAT5.775e-2035.53Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus nor... [more]
CYPE_BACSU7.543e-2035.10Probable bifunctional P-450/NADPH-P450 reductase 2... [more]
CP3A7_HUMAN7.543e-2035.53Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
CP3A5_HUMAN7.543e-2033.56Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05001E11SK FlavSen1 Citrus clementina cDNA clone C05001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293848 ID=CX293848; Name=CX293848; organism=Citrus clementina; type=EST; length=477bp
ACTACCTCTGTTTTGCTTAATTGGACAATGGTCTTATTGAGCAAGCATCA
AGATTGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATA
ATAAGCCCGACTATGGTGAATTGAACCACCTCAAAATTGTCCAGATGATA
CTTTACGAGGTACTCAGGCTTTATCCGCCCTTAACTGCGCTTAGTCGAGC
TGTTCTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTC
AAATTGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGT
GACGATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAA
GGCGGCAAAAAATCAAGTTTCATATTTCCCATTCGCATCGGGTCCTAGGA
TATGTGTTGGACAAAATTTTGCTCTAGTAGAAGCAAAAATGGCCACCGGC
AATGATTCTTCAAAACTACTCATTCGA
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