CX293848

Overview
NameCX293848
Unique NameCX293848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length477
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4F4_RAT (Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 50/156 (32.05%), Postives = 88/156 (56.41%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGD----DAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            TT+  L+W +  L++H ++QER RQEV ++  + +    ++ +L  L  + M + E LRL+PP+T +SR   ++  L +   +P GV   + +   H +P +W D    D   F PE   +      ++ +++ PF++GPR C+GQ FA+ E K+A
Sbjct:  332 TTASGLSWILYNLARHPEYQERCRQEVRELLRDRESTEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRRCTQDIVLPDGRVIPKGVICIINIFATHHNPTVWPDPEVYDPFRFDPENIKD------RSPLAFIPFSAGPRNCIGQTFAMNEMKVA 481          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4D2_DROME (Cytochrome P450 4d2 OS=Drosophila melanogaster GN=Cyp4d2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 49/160 (30.63%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD---YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATGNDSSKLL 471
            TT+  +++ +  +S+H + Q+R +QE+  V G ++       +L  LK ++ ++ E LRL+PP+  + R   ++ ++    +PAG    + + ++ +DPE + +   EF+PERF   + +   +  +Y PF++GPR C+GQ FA++E K       SKLL
Sbjct:  315 TTTSAISFCLYEISRHPEVQQRLQQEIRDVLGEDRKSPVTLRDLGELKFMENVIKESLRLHPPVPMIGRWFAEDVEIRGKHIPAGTNFTMGIFVLLRDPEYF-ESPDEFRPERFDADVPQI--HPYAYIPFSAGPRNCIGQKFAMLEMKSTV----SKLL 467          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4S3_DROME (Probable cytochrome P450 4s3 OS=Drosophila melanogaster GN=Cyp4s3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 48/146 (32.88%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAK 438
            TTS  + + + LLSK+ D Q+RA +E  ++ G  K        +  ++ ++ E LR+YP +   SR VL++ ++G LT+P G  I   + ++H+DP+ +  D   F P+RF   +++   +  ++  F++GPR C+GQ FA++E K
Sbjct:  311 TTSSAIAFALSLLSKNPDVQQRAFEEASELEGREKES------MPYLEAVIKETLRIYPSVPFFSRKVLEDLEVGKLTVPKGASISCLIYMLHRDPKNF-PDPERFDPDRFL--VNEKQMHPFAFAAFSAGPRNCIGQKFAMLELK 447          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 49/149 (32.89%), Postives = 81/149 (54.36%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            T+S  +++    L+ +     + ++E+  VF N  P  Y  L  +  +  +L E LRLYP    L R   K  ++  + +P    + +P   +H+DPE+W D   EFKPERF++  +K + +  +Y PF +GPR C+G  FAL+  K+A
Sbjct:  314 TSSSTMSFLAYNLATNHHVMTKLQEEIDTVFPNKAPIQYEALMQMDYLDCVLNESLRLYPIAPRLERVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIWSDPE-EFKPERFSKE-NKESIDPYTYMPFGAGPRNCIGMRFALIMIKLA 460          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP3AF_CAVPO (Cytochrome P450 3A15 OS=Cavia porcellus GN=CYP3A15 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17
Identity = 47/149 (31.54%), Postives = 82/149 (55.03%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNK-PDYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMA 444
            T+S  L+  M  L+ H D Q++  QE+ +   N   P Y  +  ++ + M++ E LRLYP    + R   K+ ++  ++ P G  + +P   +H+D + W  +  EF+PERF++  +K   +   Y PF +GPR C+G+  AL+  K+A
Sbjct:  309 TSSSTLSCIMYSLATHPDVQKKLHQEIDKTLPNKAFPTYDVMMEMEYLDMVVNETLRLYPVANRIERMSKKDFEINGMSFPKGTLVMIPSFALHRDSKYW-PEPDEFRPERFSKK-NKENIDPYIYMPFGNGPRNCIGRRMALMNLKLA 455          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C13A8_CAEEL (Putative cytochrome P450 CYP13A8 OS=Caenorhabditis elegans GN=cyp-13A8 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYGELNHLKIVQMILYEVLRLYPPLT-ALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAK 438
            TT++ L++    L+ +   Q + + EV +   N++  + +L+ LK +  ++ E LRL+P  + A SR  ++ T +G   + AGV + +    +H D  +WG+D  EFKPER+   ++     Q +Y  F +GPR+C+G  FAL+E K
Sbjct:  324 TTAISLSYVTYFLALNPKIQSKLQDEVDKECPNDEITFDQLSKLKYMDNVIKESLRLFPFASFANSRRCMRNTVIGEQIVEAGVDVMIDTWTLHHDKNVWGNDVEEFKPERWDSPLTP----QQAYLSFGAGPRVCLGMRFALLEQK 466          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: CP4V3_MOUSE (Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 47/148 (31.76%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFG-NNKP-DYGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAK 438
            TT+  +NW++ LL  + + Q +  QE+ +VFG +++P    +L  LK +  ++ E LR++P +   +R++ ++ ++G   +  G +  +    +H+DP  + D   EF+PERF    S+  ++  +Y PF++GPR C+GQ FA++E K
Sbjct:  333 TTAAAINWSLYLLGTNPEVQRKVDQELDEVFGRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFARSLSEDCEVGGYKVTKGTEAIIIPYALHRDPRYFPDPE-EFRPERFFPENSQG-RHPYAYVPFSAGPRNCIGQKFAVMEEK 478          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C4D10_DROMT (Cytochrome P450 4d10 OS=Drosophila mettleri GN=Cyp4d10 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 48/154 (31.17%), Postives = 82/154 (53.25%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD---YGELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAKMATGN 453
            TTS  + +    ++ + + Q +  +E++ V G +      Y  LN+L  + + + E LR+YP +  L R VL+E ++    +PAG  IG+  + + +  ++   +   FKPERF    S    N  +Y PF++GPR C+GQ FA++E K    N
Sbjct:  321 TTSSGITFFFYNIALYPECQRKCVEEIVSVLGKDTETPVTYDLLNNLNYMDLCIKETLRMYPSVPLLGRKVLQECEINGKIIPAGTNIGISPLFLGRSEDI-SSEPNTFKPERFDVVTSAEKLNPHAYIPFSAGPRNCIGQKFAMLEIKAIAAN 473          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C76A1_SOLME (Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.504e-17
Identity = 50/139 (35.97%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYGELNHLKIVQMILYEVLRLYPPLTAL-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVG 411
            TTS  + W +  L +H     + + E+LQV G NK  +  +++ L  +Q +L E LRL+PPL  L  R  +++TK     +P G Q+ +    + +DPE W D+  EFKPERF E             PF +G R+CVG
Sbjct:  275 TTSSSVEWALTELLRHPQAMAKVKLEILQVIGPNKKFEECDIDSLPYMQAVLKEQLRLHPPLPLLIPRKAIQDTKFMGYDIPKGTQVLVNAWAIGRDPEYW-DNPFEFKPERFLESKVDVKGQNYELIPFGAGRRMCVG 412          
BLAST of CX293848 vs. ExPASy Swiss-Prot
Match: C4D21_DROME (Probable cytochrome P450 4d21 OS=Drosophila melanogaster GN=Cyp4d21 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 50/150 (33.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 TTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYG----ELNHLKIVQMILYEVLRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFASGPRICVGQNFALVEAK 438
            TT+  ++  +  +S+H   QE   +E++ V G + PD      +L  LK +  ++ E +RL+PP+  L R + ++ K+G +T+P    I L    V++DPE + D  V FKPER+ +  + +    ++Y PF+SGP+ C+GQ FA ++ K
Sbjct:  320 TTTSGVSHALHAISRHPKVQECIYEELVSVLGPD-PDASVTQTKLLELKYLDCVIKETMRLHPPVPILGRYIPEDLKIGEITIPGNTSILLMPYYVYRDPEYFPDPLV-FKPERWMDMKTTSNTPPLAYIPFSSGPKNCIGQKFANLQMK 467          
The following BLAST results are available for this feature:
BLAST of CX293848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
CP4F4_RAT1.204e-1732.05Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4... [more]
CP4D2_DROME1.204e-1730.63Cytochrome P450 4d2 OS=Drosophila melanogaster GN=... [more]
CP4S3_DROME1.573e-1732.88Probable cytochrome P450 4s3 OS=Drosophila melanog... [more]
CP3AR_ONCMY1.573e-1732.89Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]
CP3AF_CAVPO2.054e-1731.54Cytochrome P450 3A15 OS=Cavia porcellus GN=CYP3A15... [more]
C13A8_CAEEL2.054e-1732.65Putative cytochrome P450 CYP13A8 OS=Caenorhabditis... [more]
CP4V3_MOUSE2.683e-1731.76Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1... [more]
C4D10_DROMT2.683e-1731.17Cytochrome P450 4d10 OS=Drosophila mettleri GN=Cyp... [more]
C76A1_SOLME3.504e-1735.97Cytochrome P450 76A1 (Fragment) OS=Solanum melonge... [more]
C4D21_DROME4.576e-1733.33Probable cytochrome P450 4d21 OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC05001E11SK FlavSen1 Citrus clementina cDNA clone C05001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293848 ID=CX293848; Name=CX293848; organism=Citrus clementina; type=EST; length=477bp
ACTACCTCTGTTTTGCTTAATTGGACAATGGTCTTATTGAGCAAGCATCA
AGATTGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATA
ATAAGCCCGACTATGGTGAATTGAACCACCTCAAAATTGTCCAGATGATA
CTTTACGAGGTACTCAGGCTTTATCCGCCCTTAACTGCGCTTAGTCGAGC
TGTTCTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTC
AAATTGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGT
GACGATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAA
GGCGGCAAAAAATCAAGTTTCATATTTCCCATTCGCATCGGGTCCTAGGA
TATGTGTTGGACAAAATTTTGCTCTAGTAGAAGCAAAAATGGCCACCGGC
AATGATTCTTCAAAACTACTCATTCGA
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