CX293852

Overview
NameCX293852
Unique NameCX293852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_ASTRU (Cytochrome c OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 4.463e-32
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G  + G+KIF  +CAQCHTVEK   HK GPNLNG+ GR++G    +SY+ AN+N  + W+ +TL++YL NPKKYIPGTKMVF GLKK ++R DLIAYL+ +T
Sbjct:    2 GQVEKGKKIFVQRCAQCHTVEKAGKHKTGPNLNGILGRKTGQAAGFSYTDANRNKGITWKNETLFEYLENPKKYIPGTKMVFAGLKKQKERQDLIAYLEAAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_SAISC (Cytochrome c OS=Saimiri sciureus GN=CYCS PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 5.829e-32
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G++IF  KC+QCHTVEKG  HK GPNL+GLFGR++G    ++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKRIFIQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKGEREDLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_HELAS (Cytochrome c OS=Helix aspersa PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.829e-32
Identity = 60/102 (58.82%), Postives = 76/102 (74.51%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G A+ G+KIF  KC QCHTVE G  HK GPNL+GLFGR+ G  P ++Y+ ANK   + W+ +TL++YL NPKKYIPGTKMVF GLK   +R  LIAYL+++T
Sbjct:    1 GZAZKGKKIFTQKCLQCHTVEAGGKHKTGPNLSGLFGRKQGQAPGFAYTDANKGKGITWKNQTLFEYLENPKKYIPGTKMVFAGLKBZTERVHLIAYLZZAT 102          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_PACTA (Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=3 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 9.943e-32
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+AK G  +FKT+C QCHT E G  HK GPNLNG+FGR SG    YSY+ ANK     WE +T+ DYL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:    8 GSAKKGATLFKTRCLQCHTTEAGGAHKVGPNLNGVFGRHSGQAEGYSYTDANKQKGALWEAQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYLLSAT 109          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_DANRE (Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 9.943e-32
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+K+F  KCAQCHTVE G  HK GPNL GLFGR++G    +SY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGFSYTDANKSKGIVWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_USTSP (Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.299e-31
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+AK G +IFKT+CAQCHT+  G  +K GPNL+GLFGR+SGT   +SY+ ANK     WEE+T  +YL NPKKYIPGTKM F GLKK +DR DL+ YL++ T
Sbjct:    5 GDAKKGARIFKTRCAQCHTLGAGEPNKVGPNLHGLFGRKSGTVEGFSYTDANKKAGQVWEEETFLEYLENPKKYIPGTKMAFGGLKKEKDRNDLVTYLREET 106          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYCB_TAKRU (Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.696e-31
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+   G+K F  KCAQCHTVE+G  HK GPNL GLFGR++G    +SY+ ANK+  + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK ST+
Sbjct:    3 GDIAKGKKAFVQKCAQCHTVEQGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWSEETLMVYLENPKKYIPGTKMIFAGIKKKTERADLIAYLKSSTS 105          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC1_YEAST (Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=CYC1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.696e-31
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 3
Query:   45 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 359
            E   G+AK G  +FKT+C QCHTVEKG  HK GPNL+G+FGR SG    YSY+ AN    V W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct:    3 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 107          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_STELP (Cytochrome c OS=Stellaria longipes PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.215e-31
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+AK G  +FKT+CAQCHT+ +G G+K GPNL+GLFGR +G+   +SY+ ANK   + W + TL++YL NPKKYIPGTKM F GLKK +DR DLI +L+ ST
Sbjct:    6 GDAKKGANLFKTRCAQCHTLGEGEGNKIGPNLHGLFGRHTGSVEGFSYTDANKAKGIEWNKDTLFEYLENPKKYIPGTKMAFGGLKKDKDRNDLITFLQDST 107          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_ISSOR (Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.215e-31
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+AK G  +FKT+CAQCHT+E G  HK GPNL+G+F R SG    YSY+ ANK   V W E T+ DYL NPKKYIPGTKM F GLKK +DR DL+ Y+ +++
Sbjct:    7 GSAKKGATLFKTRCAQCHTIEAGGPHKVGPNLHGIFSRHSGQAEGYSYTDANKRAGVEWAEPTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYMLEAS 108          
The following BLAST results are available for this feature:
BLAST of CX293852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYC_ASTRU4.463e-3258.82Cytochrome c OS=Asterias rubens PE=1 SV=2[more]
CYC_SAISC5.829e-3259.80Cytochrome c OS=Saimiri sciureus GN=CYCS PE=3 SV=3[more]
CYC_HELAS5.829e-3258.82Cytochrome c OS=Helix aspersa PE=1 SV=1[more]
CYC_PACTA9.943e-3260.78Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=... [more]
CYC_DANRE9.943e-3260.19Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3[more]
CYC_USTSP1.299e-3160.78Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1[more]
CYCB_TAKRU1.696e-3161.17Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 ... [more]
CYC1_YEAST1.696e-3160.00Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=... [more]
CYC_STELP2.215e-3158.82Cytochrome c OS=Stellaria longipes PE=3 SV=1[more]
CYC_ISSOR2.215e-3158.82Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC05001F05SK FlavSen1 Citrus clementina cDNA clone C05001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293852 ID=CX293852; Name=CX293852; organism=Citrus clementina; type=EST; length=422bp
CTCTTTGGATCTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCA
CCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGC
TCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATT
TGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGTGTACTCATAC
TCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTA
TGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTAT
TCCCTGGATTGAAGAAGCCTCAGGATCGCGCTGACCTTATTGCATATTTG
AAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCAT
TTTGCAGTTGTTGAAGATTGTT
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