CX293852

Overview
NameCX293852
Unique NameCX293852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1919 contig Ccv1_Contig1919:56..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC23_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 3
Query:   93 KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNW-EEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 353
            +C  CH VE G     GP+L GLFG + G  P + YS A+   A    +E  L  YL +PK  +PG KMVF GLK P D   ++AYLK
Sbjct:    9 QCQACHKVEAGEDGV-GPSLFGLFGHKLGQAPGFKYSEAHLKFAQQTVDEPFLTKYLADPKASLPGNKMVFAGLKNPDDVKAVLAYLK 95          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CY550_AQUIT (Cytochrome c-550 OS=Aquaspirillum itersonii PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVN---WEEKTLYDYLLNPKKYIPG--------TKMVFPGLKKPQDRADLIAYL 350
            G+A  G  + K+ C  CH+ E+G   KQGPNL G+  R  G    ++YS + K  A     W+  TL DY+ +P  ++           KM F  L KP +RAD+IAYL
Sbjct:    1 GDAAKGANVAKS-CGTCHSFEQGGAKKQGPNLFGITTRGPGKAEGFNYSPSYKAAAAKGFAWDAATLQDYITDPTAFLSNKTGDAAARDKMTFK-LAKPDERADVIAYL 107          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC22_RHOCE (Cytochrome c2 iso-2 OS=Rhodospirillum centenum PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 42/117 (35.90%), Postives = 59/117 (50.43%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANK---NMAVNWEEKTLYDYLLNPKKYI--------------PGTKMVFPGLKKPQDRADLIAYLKQ 356
            G+   GE +FK KC  CH V   A +  GP L G+  RQ+GT P ++YSA N       ++W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLKQ
Sbjct:    3 GDPAKGEAVFK-KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQ 117          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC2_RHORU (Cytochrome c2 OS=Rhodospirillum rubrum GN=cycA PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNM---AVNWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYLK 353
            G+A AGEK+ K KC  CHT ++G  +K GPNL G+F   +     Y+YS +   M    + W E  L  Y+ NPK ++          +KM F  L K  +  ++IAYLK
Sbjct:    2 GDAAAGEKVSK-KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLK 109          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC21_RHOCE (Cytochrome c2 iso-1 OS=Rhodospirillum centenum PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 41/116 (35.34%), Postives = 58/116 (50.00%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANK---NMAVNWEEKTLYDYLLNPKKYI--------------PGTKMVFPGLKKPQDRADLIAYLK 353
            G+   GE +FK KC  CH +   A +  GP L G+ GRQ+G  P +SYSA N       ++W  + +  YL +P  ++                TKMVF  L   Q+R D++AYLK
Sbjct:    3 GDPVKGEAVFK-KCMACHRIGPDAKNLVGPVLTGVVGRQAGVAPGFSYSALNHAAGEAGLHWTAENIMAYLPDPNAFLRKFVTDAGNPEAAKGSTKMVFK-LPNEQERKDVVAYLK 116          
The following BLAST results are available for this feature:
BLAST of CX293852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYC23_RHOCR1.763e-1245.45Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CY550_AQUIT1.493e-1137.61Cytochrome c-550 OS=Aquaspirillum itersonii PE=1 S... [more]
CYC22_RHOCE4.343e-1135.90Cytochrome c2 iso-2 OS=Rhodospirillum centenum PE=... [more]
CYC2_RHORU9.675e-1137.27Cytochrome c2 OS=Rhodospirillum rubrum GN=cycA PE=... [more]
CYC21_RHOCE9.675e-1135.34Cytochrome c2 iso-1 OS=Rhodospirillum centenum PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001F05SK FlavSen1 Citrus clementina cDNA clone C05001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293852 ID=CX293852; Name=CX293852; organism=Citrus clementina; type=EST; length=422bp
CTCTTTGGATCTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCA
CCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGC
TCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATT
TGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGTGTACTCATAC
TCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTA
TGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTAT
TCCCTGGATTGAAGAAGCCTCAGGATCGCGCTGACCTTATTGCATATTTG
AAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCAT
TTTGCAGTTGTTGAAGATTGTT
back to top