CX293852

Overview
NameCX293852
Unique NameCX293852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1919 contig Ccv1_Contig1919:56..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_ENTIN (Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.980e-44
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ++F +APPG+   G KIFK KCA+CHTV+ GAGHKQGPNLNG FGR SGT   +SYSAA+K+   +W++ TLYDYLLNPKKYIPGTKMVF GLKKP++RADLIA+LK +TA
Sbjct:    1 STFABAPPGBPAKGAKIFKAKCAZCHTVBAGAGHKQGPNLNGAFGRTSGTAAGFSYSAABKBKTADWBZBTLYDYLLNPKKYIPGTKMVFAGLKKPZBRADLIAFLKDATA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_CHLRE (Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.931e-43
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 3
Query:   30 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            M++F EAP G+   GEKIFKTKCAQCH  EKG GHKQGPNL GLFGR SGT   ++YS ANK  AV W E TLY+YLLNPKKY+PG KMVF GLKKP++RADLIAYLKQ+TA
Sbjct:    1 MSTFAEAPAGDLARGEKIFKTKCAQCHVAEKGGGHKQGPNLGGLFGRVSGTAAGFAYSKANKEAAVTWGESTLYEYLLNPKKYMPGNKMVFAGLKKPEERADLIAYLKQATA 112          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_SCHGR (Cytochrome c OS=Schistocerca gregaria PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.027e-36
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 3
Query:   51 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G  P +SY+ ANK+  + W+E TL+ YL NPKKYIPGTKMVF GLKKP++RADLIAYLK+ST
Sbjct:    4 PQGDVEKGKKIFVQRCAQCHTVEAGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKSKGITWDENTLFIYLENPKKYIPGTKMVFAGLKKPEERADLIAYLKEST 107          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_MACSY (Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 5.094e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  P YSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_MACMU (Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.094e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  P YSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGITWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_HIPAM (Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.690e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G +P +SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLKQ+T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQSPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKQAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_PONAB (Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.135e-35
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  P YSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_PANTR (Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.135e-35
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  P YSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_HUMAN (Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.135e-35
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  P YSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_GORGO (Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE=3 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 1.135e-35
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G  P YSY+AANKN  + W E TL +YL NPKKYIPGTKM+F G+KK ++RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CX293852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYC_ENTIN2.980e-4469.37Cytochrome c OS=Enteromorpha intestinalis PE=1 SV=... [more]
CYC_CHLRE1.931e-4372.32Cytochrome c OS=Chlamydomonas reinhardtii GN=CYC1 ... [more]
CYC_SCHGR1.027e-3665.38Cytochrome c OS=Schistocerca gregaria PE=1 SV=2[more]
CYC_MACSY5.094e-3665.69Cytochrome c OS=Macaca sylvanus GN=CYCS PE=3 SV=3[more]
CYC_MACMU5.094e-3665.69Cytochrome c OS=Macaca mulatta GN=CYCS PE=1 SV=2[more]
CYC_HIPAM8.690e-3665.69Cytochrome c OS=Hippopotamus amphibius GN=CYCS PE=... [more]
CYC_PONAB1.135e-3565.69Cytochrome c OS=Pongo abelii GN=CYCS PE=3 SV=3[more]
CYC_PANTR1.135e-3565.69Cytochrome c OS=Pan troglodytes GN=CYCS PE=1 SV=2[more]
CYC_HUMAN1.135e-3565.69Cytochrome c OS=Homo sapiens GN=CYCS PE=1 SV=2[more]
CYC_GORGO1.135e-3565.69Cytochrome c OS=Gorilla gorilla gorilla GN=CYCS PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001F05SK FlavSen1 Citrus clementina cDNA clone C05001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293852 ID=CX293852; Name=CX293852; organism=Citrus clementina; type=EST; length=422bp
CTCTTTGGATCTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCA
CCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGC
TCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATT
TGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGTGTACTCATAC
TCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTA
TGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTAT
TCCCTGGATTGAAGAAGCCTCAGGATCGCGCTGACCTTATTGCATATTTG
AAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCAT
TTTGCAGTTGTTGAAGATTGTT
back to top