CX293852

Overview
NameCX293852
Unique NameCX293852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1919 contig Ccv1_Contig1919:56..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_CAMDR (Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.651e-34
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G    +SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_RAT (Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 4.768e-34
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G    +SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_MOUSE (Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 4.768e-34
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G    +SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_VARVA (Cytochrome c OS=Varanus varius PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 6.228e-34
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+ LFGR++G    +SY+AANKN  + W E TL++YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++TA
Sbjct:    2 GDVEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHQLFGRKTGEAEGFSYTAANKNKGITWGEDTLFEYLENPKKYIPGTKMIFAGIKKKTERDDLIAYLKEATA 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_THEAN (Cytochrome c OS=Theileria annulata GN=TA12950 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.228e-34
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 3
Query:   51 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            P G+   G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG+T  Y+YS ANKN  + W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLK++++
Sbjct:   11 PEGDPAKGAKLFKSKCAQCHTINKGGSVKQGPNLFGFYGRKSGSTD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_EMENI (Cytochrome c OS=Emericella nidulans GN=cycA PE=2 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 6.228e-34
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 3
Query:   42 DEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            D   PG++  G K+F+T+C QCHTVE G GHK GPNL+GLFGR++G    Y+Y+ ANK   V W+E +L+ YL NPKK+IPGTKM F GLKK ++R DLI YLK+STA
Sbjct:    6 DSYSPGDSTKGAKLFETRCKQCHTVENGGGHKVGPNLHGLFGRKTGQAEGYAYTDANKQADVTWDENSLFKYLENPKKFIPGTKMAFGGLKKTKERNDLITYLKESTA 113          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_ASPNG (Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.228e-34
Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 3
Query:   54 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            PG++  G K+F+T+CAQCHTVE G  HK GPNL+GLFGR++G +  Y+Y+ ANK   V W+E TL+ YL NPKK+IPGTKM F GLKK ++R DLI YLK+STA
Sbjct:    8 PGDSAKGAKLFQTRCAQCHTVEAGGPHKVGPNLHGLFGRKTGQSEGYAYTDANKQAGVTWDENTLFSYLENPKKFIPGTKMAFGGLKKGKERNDLITYLKESTA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_THEPA (Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.133e-34
Identity = 65/105 (61.90%), Postives = 83/105 (79.05%), Query Frame = 3
Query:   51 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            P G++  G K+FK+KCAQCHT+ KG   KQGPNL G +GR+SG +  Y+YS ANKN  + W +K L+ YL+NPK+YIPGTKMVF GLKK QDRADLIAYLK++++
Sbjct:   11 PEGDSSKGAKLFKSKCAQCHTINKGGSVKQGPNLYGFYGRKSGASD-YAYSDANKNSGIVWSDKHLFVYLVNPKQYIPGTKMVFAGLKKEQDRADLIAYLKEASS 114          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_STRCA (Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 8.133e-34
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 3
Query:   57 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G    +SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLDGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_HAEIR (Cytochrome c OS=Haematobia irritans PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.062e-33
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 3
Query:   51 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 362
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G    ++Y+ ANK   + W++ TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAAGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
The following BLAST results are available for this feature:
BLAST of CX293852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYC_CAMDR3.651e-3463.73Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 S... [more]
CYC_RAT4.768e-3463.73Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs... [more]
CYC_MOUSE4.768e-3463.73Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1... [more]
CYC_VARVA6.228e-3462.14Cytochrome c OS=Varanus varius PE=1 SV=2[more]
CYC_THEAN6.228e-3462.86Cytochrome c OS=Theileria annulata GN=TA12950 PE=3... [more]
CYC_EMENI6.228e-3459.26Cytochrome c OS=Emericella nidulans GN=cycA PE=2 S... [more]
CYC_ASPNG6.228e-3461.54Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=... [more]
CYC_THEPA8.133e-3461.90Cytochrome c OS=Theileria parva GN=TP02_0396 PE=3 ... [more]
CYC_STRCA8.133e-3462.14Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2[more]
CYC_HAEIR1.062e-3359.62Cytochrome c OS=Haematobia irritans PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05001F05SK FlavSen1 Citrus clementina cDNA clone C05001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293852 ID=CX293852; Name=CX293852; organism=Citrus clementina; type=EST; length=422bp
CTCTTTGGATCTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCA
CCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGC
TCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATT
TGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGTGTACTCATAC
TCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTA
TGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTAT
TCCCTGGATTGAAGAAGCCTCAGGATCGCGCTGACCTTATTGCATATTTG
AAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCAT
TTTGCAGTTGTTGAAGATTGTT
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